signeR-package	signeR-package
Average_exp	methods
Average_exp,SignExp-method	methods
Average_sign	methods
Average_sign,SignExp-method	methods
BICboxplot	plots
Classify	classify
Classify,SignExp,character-method	classify
DiffExp	diffexp
DiffExp,SignExp,character-method	diffexp
ExposureBarplot	plots
ExposureBarplot,SignExp-method	plots
ExposureBoxplot	plots
ExposureBoxplot,SignExp-method	plots
ExposureHeat	plots
ExposureHeat,SignExp-method	plots
genCountMatrixFromVcf	genMatrix
genOpportunityFromGenome	genMatrix
Median_exp	methods
Median_exp,SignExp-method	methods
Median_sign	methods
Median_sign,SignExp-method	methods
Normalize	methods
Normalize,SignExp-method	methods
Paths	plots
Paths,SignExp-method	plots
Reorder_mutations	methods
Reorder_mutations,SignExp,numeric-method	methods
Reorder_samples	methods
Reorder_samples,SignExp,numeric-method	methods
Reorder_signatures	methods
Reorder_signatures,SignExp,numeric-method	methods
setMutations	methods
setMutations,SignExp-method	methods
setSamples	methods
setSamples,SignExp-method	methods
signeR	signeR
SignExp	signexp-class
SignExp-class	signexp-class
SignHeat	plots
SignHeat,SignExp-method	plots
SignPlot	plots
SignPlot,SignExp-method	plots
