abundanceContig	abundanceContig
addVariable	addVariable
alluvialClonotypes	alluvialClonotypes
calIndex	calIndex
calIndex,Startrac-method	calIndex
clonalDiversity	clonalDiversity
clonalHomeostasis	clonalHomeostasis
clonalOverlap	clonalOverlap
clonalOverlay	clonalOverlay
clonalProportion	clonalProportion
clonesizeDistribution	clonesizeDistribution
clusterTCR	clusterTCR
combineBCR	combineBCR
combineExpression	combineExpression
combineTCR	combineTCR
compareClonotypes	compareClonotypes
contig_list	contig_list
expression2List	expression2List
getCirclize	getCirclize
getSig	getSig
getSig,Startrac-method	getSig
highlightClonotypes	highlightClonotypes
initialize	initialize-methods
initialize,Startrac-method	initialize-methods
initialize,StartracOut-method	initialize-StartracOut-method
lengthContig	lengthContig
loginfo	loginfo
mcol.entropy	mcol.entropy
mrow.entropy	mrow.entropy
occupiedscRepertoire	occupiedscRepertoire
pIndex	pIndex
pIndex,Startrac-method	pIndex
quantContig	quantContig
screp_example	screp_example
show	show
show,Startrac-method	show
show,StartracOut-method	show-StartracOut-method
Startrac	Startrac
Startrac-class	Startrac
Startrac.calIndex	calIndex
Startrac.getSig	getSig
Startrac.pIndex	pIndex
Startrac.run	Startrac.run
StartracDiversity	StartracDiversity
StartracOut	StartracOut
StartracOut-class	StartracOut
stripBarcode	stripBarcode
subsetContig	subsetContig
