# iPath pipeline for detecting perturbed pathways at individual level

## Documentation for package ‘iPath’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

density_fall | density fall plot
GSDB_example | example gene set database (GSDB)
GSEA | GSEA calculation
iES_cal2 | iES calculation Function
iES_surv | iES calculation Function
iES_survPlot | iES survival for a certain pathway
prad_cli | simulated clinical data for PRAD cancer patients
prad_exprs | expression matrix for PRAD cancer patients in TCGA
prad_inds | normal (0) and tumor (1) classes associated with PRAD expression data
rem_data | remove genes with 0 sd
setUp_BPPARAM | set up for the parallel computing for biocParallel.
water_fall | water fall plot