Package: PoDCall
Type: Package
Title: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Version: 1.2.0
Authors@R: c(person("Hans Petter", "Brodal", 
                    role=c("aut", "cre"), 
                    email="hans.petter.brodal@rr-research.no"),
            person("Marine", "Jeanmougin", role="aut", 
                    email="marine.jeanmougin@rr-research.no"),
            person("Guro Elisabeth", "Lind", role="aut", 
                    email="guro.elisabeth.lind@rr-research.no"))
Description: Reads files exported from 'QuantaSoft' containing amplitude values 
    from a run of ddPCR (96 well plate) and robustly sets thresholds to 
    determine positive droplets for each channel of each individual well. 
    Concentration and normalized concentration in addition to other metrics is 
    then calculated for each well. Results are returned as a table, optionally 
    written to file, as well as optional plots (scatterplot and 
    histogram) for both channels per well written to file. The package includes
    a shiny application which provides an interactive and user-friendly 
    interface to the full functionality of PoDCall.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.1
Depends: R (>= 4.1)
Imports: ggplot2, gridExtra, mclust, diptest, rlist, shiny, DT,
        LaplacesDemon, purrr, shinyjs, readr, grDevices, stats, utils
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Classification, Epigenetics, ddPCR, DifferentialMethylation,
        CpGIsland, DNAMethylation,
git_url: https://git.bioconductor.org/packages/PoDCall
git_branch: RELEASE_3_14
git_last_commit: 11015b2
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 02:17:47 UTC; biocbuild
Author: Hans Petter Brodal [aut, cre],
  Marine Jeanmougin [aut],
  Guro Elisabeth Lind [aut]
Maintainer: Hans Petter Brodal <hans.petter.brodal@rr-research.no>
Built: R 4.1.1; ; 2021-10-27 16:40:59 UTC; unix
