.PhIPData	PhIPData-class
aliases	aliases
assay<-,PhIPData,character-method	PhIPData-methods
assay<-,PhIPData,missing-method	PhIPData-methods
assay<-,PhIPData,numeric-method	PhIPData-methods
assays<-,PhIPData,list-method	PhIPData-methods
assays<-,PhIPData,SimpleList-method	PhIPData-methods
counts,PhIPData-method	PhIPData-methods
counts<-,PhIPData-method	PhIPData-methods
defineBeads	defineBeads
deleteAlias	aliases
getAlias	aliases
getAliasPath	aliases
getBeadsName	defineBeads
getLibrary	peptideLibraries
getLibraryPath	peptideLibraries
librarySize	librarySize
logfc	PhIPData-methods
logfc,PhIPData-method	PhIPData-methods
logfc<-	PhIPData-methods
logfc<-,PhIPData-method	PhIPData-methods
makeLibrary	peptideLibraries
peptideInfo	PhIPData-methods
peptideInfo,PhIPData-method	PhIPData-methods
peptideInfo<-	PhIPData-methods
peptideInfo<-,PhIPData-method	PhIPData-methods
peptideLibraries	peptideLibraries
PhIPData	PhIPData-class
PhIPData-class	PhIPData-class
PhIPData-methods	PhIPData-methods
prob	PhIPData-methods
prob,PhIPData-method	PhIPData-methods
prob<-	PhIPData-methods
prob<-,PhIPData-method	PhIPData-methods
propReads	propReads
sampleInfo	PhIPData-methods
sampleInfo,PhIPData-method	PhIPData-methods
sampleInfo<-	PhIPData-methods
sampleInfo<-,PhIPData-method	PhIPData-methods
setAlias	aliases
setAliasPath	aliases
setBeadsName	defineBeads
setLibraryPath	peptideLibraries
subsetBeads	subsetBeads
