Package: PFP
Type: Package
Title: Pathway Fingerprint Framework in R
Version: 1.2.0
biocViews: Software, Pathways, RNASeq
Authors@R: person("XC", "Zhang",email = "kunghero@163.com",role = c("aut","cre" ))
Description: An implementation of the pathway fingerprint framework that introduced in paper "Pathway Fingerprint: a novel pathway knowledge and topology based method for biomarker discovery and characterization".
    This method provides a systematic comparisons between a gene set (such as a list of differentially expressed genes) and well-studied "basic pathway networks" (KEGG pathways), measuring the importance of pathways and genes for the gene set.
    The package is helpful for researchers to find the biomarkers and its function.
Depends: R (>= 4.0)
Imports: graph, igraph, KEGGgraph, clusterProfiler, ggplot2, plyr,
        tidyr, magrittr, stats, methods, utils
Suggests: knitr, testthat, rmarkdown, org.Hs.eg.db
License: GPL-2
Encoding: UTF-8
LazyData: FALSE
VignetteBuilder: knitr
NeedsCompilation: no
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
URL: https://github.com/aib-group/PFP
BugReports: https://github.com/aib-group/PFP/issues
git_url: https://git.bioconductor.org/packages/PFP
git_branch: RELEASE_3_14
git_last_commit: 0d1251a
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
Packaged: 2021-10-27 02:13:06 UTC; biocbuild
Author: XC Zhang [aut, cre]
Maintainer: XC Zhang <kunghero@163.com>
Built: R 4.1.1; ; 2021-10-27 16:38:12 UTC; unix
