CytoTree-package	CytoTree-package
buildTree	buildTree
constraintMatrix	constraintMatrix
correctBatchCYT	correctBatchCYT
createCYT	createCYT
CYT	CYT-class
CYT-class	CYT-class
CYT-class,	CYT-class
CYTclass,	CYT-class
CytoTree	CytoTree-package
defLeafCells	defLeafCells
defRootCells	defRootCells
fetchCell	fetchCell
fetchClustMeta	fetchClustMeta
fetchPlotMeta	fetchPlotMeta
find_neighbors	find_neighbors
gatingMatrix	gatingMatrix
plot2D	plot2D
plot3D	plot3D
plotBranchHeatmap	plotBranchHeatmap
plotCluster	plotCluster
plotClusterHeatmap	plotClusterHeatmap
plotHeatmap	plotHeatmap
plotMarkerDensity	plotMarkerDensity
plotPieCluster	plotPieCluster
plotPieTree	plotPieTree
plotPseudotimeDensity	plotPseudotimeDensity
plotPseudotimeTraj	plotPseudotimeTraj
plotTrajHeatmap	plotTrajHeatmap
plotTree	plotTree
plotViolin	plotViolin
processingCluster	processingCluster
Rphenograph	Rphenograph
runClara	runClara
runCluster	runCluster
runDiff	runDiff
runDiffusionMap	runDiffusionMap
runExprsExtract	runExprsExtract
runExprsMerge	runExprsMerge
runFastPCA	runFastPCA
runHclust	runHclust
runKmeans	runKmeans
runKNN	runKNN
runMclust	runMclust
runPhenograph	runPhenograph
runPseudotime	runPseudotime
runSOM	runSOM
runTSNE	runTSNE
runUMAP	runUMAP
runWalk	runWalk
show,	show-CYT-method
show,CYT-method	show-CYT-method
show-method	show-CYT-method
subsetCYT	subsetCYT
updateClustMeta	updateClustMeta
updatePlotMeta	updatePlotMeta
