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| bhuvad_theme | Custom theme |
| characteriseGeneset | Functionally characterise a list of genes |
| computeMsigNetwork | Compute a network using computed gene set overlap |
| computeMsigOverlap | Compute gene set overlap |
| computeMsigWordFreq | Compute word frequencies for a single MSigDB collection |
| getMsigBlacklist | Blacklist words for MSigDB gene set text mining |
| hgsc | The Hallmark collection from the MSigDB |
| mem_mat_hs | Binary membership matrix for the Human MSigDB |
| mem_mat_mm | Binary membership matrix for the Mouse MSigDB |
| plotGeneStats | Plot gene statistics for clusters of gene sets |
| plotMsigNetwork | Plot a gene set overlap network |
| plotMsigWordcloud | Compute and plot word frequencies for multiple MSigDB collections |