3bd39b15876b4db6296f52e8cab7cb7d *CITATION
1fcb88557179280b2d500e5d0f767c08 *DESCRIPTION
aeb5e11c1111cdebd9dcbebd0f207e86 *INDEX
a9131c2d3b1a3eac0730713271d6ff0d *Meta/Rd.rds
1cd3a46d593ae31db7d634646e9a6e29 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
fbcafe5a9501ea9464d4f0583f4d58a9 *Meta/hsearch.rds
c5f032a9b90e02d4f5276ceb6a628094 *Meta/links.rds
02a134de0bef415d37d228f744276dba *Meta/nsInfo.rds
5863292c0f2e67613c8848756aa4d028 *Meta/package.rds
f9b86d1ac1cafe262e1d9f0576e4614a *Meta/vignette.rds
e36b97e50c745130247d6b5e8ade1f08 *NAMESPACE
5ff8184f1ec6b36f5337056ac21e70b8 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/tigre
7c6fa0a61a3bfb841f70da46ee861df2 *R/tigre.rdb
dbd555bef855533756520dd8f386cc5e *R/tigre.rdx
93d99fe85415820821491068477470b6 *data/drosophila_gpsim_fragment.RData
ccf5e883bd16e84ede1f678677405117 *data/drosophila_mmgmos_fragment.RData
d23057927b04678da6fbfbf25b15a340 *doc/index.html
3012c15924e36816a8cf8419c2cbad74 *doc/tigre.R
2d09574785b6884936d58ac5d56f3a99 *doc/tigre.Rnw
a858626a22033487e7421e337317ac6b *doc/tigre.pdf
ecc1eb2b4f040f38617dbf81fa747cfc *help/AnIndex
72b4c64d887b451fd6c4b3034ed1cc05 *help/CGoptim.html
724fbd0c6abb57b3e2cb6296ad881750 *help/ExpressionTimeSeries-class.html
724fbd0c6abb57b3e2cb6296ad881750 *help/ExpressionTimeSeries.html
fca7aa182c251d479f94d24c034ad286 *help/GPLearn.html
0f9d271ed63532326afa3cd5d15a98f3 *help/GPModel-class.html
0f9d271ed63532326afa3cd5d15a98f3 *help/GPModel.html
0abc53a1bccb61cf273319ea73a04904 *help/GPPlot.html
54eb919743cc50709a386580081a8c80 *help/GPRankTFs.html
54eb919743cc50709a386580081a8c80 *help/GPRankTargets.html
72b4c64d887b451fd6c4b3034ed1cc05 *help/SCGoptim.html
71c43cb8d106a2237877f6551dcd2b78 *help/TF,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/TF.html
71c43cb8d106a2237877f6551dcd2b78 *help/[,scoreList,ANY-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/[,scoreList-method.html
6ee8fabf843fa202acc4637a8129e42d *help/aliases.rds
71c43cb8d106a2237877f6551dcd2b78 *help/baseloglikelihoods,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/baseloglikelihoods.html
c94b23cf149ec57f7803dc16e83f5818 *help/boundedTransform.html
71c43cb8d106a2237877f6551dcd2b78 *help/c,scoreList-method.html
fb7178fd550231ecabf8ad72ae5e2944 *help/cgpdisimExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/cgpdisimExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpdisimGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpdisimLogLikeGradients.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpdisimLogLikelihood.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpdisimObjective.html
fb7178fd550231ecabf8ad72ae5e2944 *help/cgpdisimUpdateProcesses.html
fb7178fd550231ecabf8ad72ae5e2944 *help/cgpsimExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/cgpsimExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpsimGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpsimLogLikeGradients.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpsimLogLikelihood.html
0c93ea05e4c1c612d6e8161760b20a49 *help/cgpsimObjective.html
72b4c64d887b451fd6c4b3034ed1cc05 *help/cgpsimOptimise.html
fb7178fd550231ecabf8ad72ae5e2944 *help/cgpsimUpdateProcesses.html
10b1534397f3bdbcaeb5580635ada908 *help/cmpndKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/cmpndKernDiagCompute.html
a9f030fcf05948dd53d752a6496548e8 *help/cmpndKernDiagGradX.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/cmpndKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/cmpndKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/cmpndKernExtractParam.html
a9f030fcf05948dd53d752a6496548e8 *help/cmpndKernGradX.html
6fa145bc713f91c6ba22ac81e81b5956 *help/cmpndKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/cmpndKernParamInit.html
71c43cb8d106a2237877f6551dcd2b78 *help/datasetName,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/datasetName.html
10b1534397f3bdbcaeb5580635ada908 *help/disimKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/disimKernDiagCompute.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/disimKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/disimKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/disimKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/disimKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/disimKernParamInit.html
10b1534397f3bdbcaeb5580635ada908 *help/disimXdisimKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/disimXdisimKernGradient.html
10b1534397f3bdbcaeb5580635ada908 *help/disimXrbfKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/disimXrbfKernGradient.html
10b1534397f3bdbcaeb5580635ada908 *help/disimXsimKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/disimXsimKernGradient.html
92be5ff5a488e1edb8d7a96fcf9916b2 *help/drosophila_gpsim_fragment.html
d81d6daaed17718c850d506b6b0fad75 *help/drosophila_mmgmos_fragment.html
c94b23cf149ec57f7803dc16e83f5818 *help/expTransform.html
71c43cb8d106a2237877f6551dcd2b78 *help/experimentSet,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/experimentSet.html
d21789a57fbc1d22c9d083f7a3ca1127 *help/export.html
d21789a57fbc1d22c9d083f7a3ca1127 *help/export.scores.html
fb7178fd550231ecabf8ad72ae5e2944 *help/gammaPriorExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/gammaPriorExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gammaPriorGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gammaPriorLogProb.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/gammaPriorParamInit.html
cd42aa68888fa18aa53c180dd54b970e *help/generateModels.html
71c43cb8d106a2237877f6551dcd2b78 *help/genes,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/genes.html
7d2a2c330ea6895bc80c00e85e94d576 *help/gpdisimCreate.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/gpdisimDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/gpdisimExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/gpdisimExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpdisimGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpdisimLogLikeGradients.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpdisimLogLikelihood.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpdisimObjective.html
fb7178fd550231ecabf8ad72ae5e2944 *help/gpdisimUpdateProcesses.html
7d2a2c330ea6895bc80c00e85e94d576 *help/gpsimCreate.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/gpsimDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/gpsimExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/gpsimExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpsimGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpsimLogLikeGradients.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpsimLogLikelihood.html
0c93ea05e4c1c612d6e8161760b20a49 *help/gpsimObjective.html
fb7178fd550231ecabf8ad72ae5e2944 *help/gpsimUpdateProcesses.html
724fbd0c6abb57b3e2cb6296ad881750 *help/initialize,ExpressionTimeSeries-method.html
0f9d271ed63532326afa3cd5d15a98f3 *help/initialize,GPModel-method.html
fb7178fd550231ecabf8ad72ae5e2944 *help/invgammaPriorExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/invgammaPriorExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/invgammaPriorGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/invgammaPriorLogProb.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/invgammaPriorParamInit.html
0f9d271ed63532326afa3cd5d15a98f3 *help/is.GPModel,GPModel-method.html
0f9d271ed63532326afa3cd5d15a98f3 *help/is.GPModel.html
10b1534397f3bdbcaeb5580635ada908 *help/kernCompute.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/kernCreate.html
10b1534397f3bdbcaeb5580635ada908 *help/kernDiagCompute.html
a9f030fcf05948dd53d752a6496548e8 *help/kernDiagGradX.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/kernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/kernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/kernExtractParam.html
a9f030fcf05948dd53d752a6496548e8 *help/kernGradX.html
6fa145bc713f91c6ba22ac81e81b5956 *help/kernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/kernParamInit.html
0c93ea05e4c1c612d6e8161760b20a49 *help/kernPriorGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/kernPriorLogProb.html
71c43cb8d106a2237877f6551dcd2b78 *help/knownTargets,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/knownTargets.html
71c43cb8d106a2237877f6551dcd2b78 *help/length,scoreList-method.html
c2a9f6cfa43a344f4d4cc13ef7cd5815 *help/lnDiffErfs.html
71c43cb8d106a2237877f6551dcd2b78 *help/loglikelihoods,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/loglikelihoods.html
10b1534397f3bdbcaeb5580635ada908 *help/mlpKernCompute.html
a9f030fcf05948dd53d752a6496548e8 *help/mlpKernDiagGradX.html
fb7178fd550231ecabf8ad72ae5e2944 *help/mlpKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/mlpKernExtractParam.html
a9f030fcf05948dd53d752a6496548e8 *help/mlpKernGradX.html
6fa145bc713f91c6ba22ac81e81b5956 *help/mlpKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/mlpKernParamInit.html
71c43cb8d106a2237877f6551dcd2b78 *help/modelArgs,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/modelArgs.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/modelDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/modelExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/modelExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/modelGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/modelLogLikelihood.html
0c93ea05e4c1c612d6e8161760b20a49 *help/modelObjective.html
72b4c64d887b451fd6c4b3034ed1cc05 *help/modelOptimise.html
0f9d271ed63532326afa3cd5d15a98f3 *help/modelStruct,GPModel-method.html
0f9d271ed63532326afa3cd5d15a98f3 *help/modelStruct.html
b20f634f261ff7cc412716096e1b94f3 *help/modelTieParam.html
0f9d271ed63532326afa3cd5d15a98f3 *help/modelType,GPModel-method.html
0f9d271ed63532326afa3cd5d15a98f3 *help/modelType.html
fb7178fd550231ecabf8ad72ae5e2944 *help/modelUpdateProcesses.html
10b1534397f3bdbcaeb5580635ada908 *help/multiKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/multiKernDiagCompute.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/multiKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/multiKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/multiKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/multiKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/multiKernParamInit.html
63c9777b6331977913483c13ca00a254 *help/optimiDefaultConstraint.html
72b4c64d887b451fd6c4b3034ed1cc05 *help/optimiDefaultOptions.html
71c43cb8d106a2237877f6551dcd2b78 *help/params,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/params.html
c8b78050020e58bea64b42d7f9baf302 *help/paths.rds
dd9f4a175daee24f21ad58cfda6e282c *help/plotTimeseries.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/priorCreate.html
fb7178fd550231ecabf8ad72ae5e2944 *help/priorExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/priorExtractParam.html
0c93ea05e4c1c612d6e8161760b20a49 *help/priorGradient.html
0c93ea05e4c1c612d6e8161760b20a49 *help/priorLogProb.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/priorParamInit.html
9c16b1265400d10b07521cd2f55228ee *help/processData.html
9c16b1265400d10b07521cd2f55228ee *help/processRawData.html
10b1534397f3bdbcaeb5580635ada908 *help/rbfKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/rbfKernDiagCompute.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/rbfKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/rbfKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/rbfKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/rbfKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/rbfKernParamInit.html
71c43cb8d106a2237877f6551dcd2b78 *help/scoreList-class.html
71c43cb8d106a2237877f6551dcd2b78 *help/scoreList.html
71c43cb8d106a2237877f6551dcd2b78 *help/sharedModel,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/sharedModel.html
0f9d271ed63532326afa3cd5d15a98f3 *help/show,GPModel-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/show,scoreList-method.html
c94b23cf149ec57f7803dc16e83f5818 *help/sigmoidTransform.html
10b1534397f3bdbcaeb5580635ada908 *help/simKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/simKernDiagCompute.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/simKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/simKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/simKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/simKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/simKernParamInit.html
10b1534397f3bdbcaeb5580635ada908 *help/simXrbfKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/simXrbfKernGradient.html
10b1534397f3bdbcaeb5580635ada908 *help/simXsimKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/simXsimKernGradient.html
71c43cb8d106a2237877f6551dcd2b78 *help/sort,scoreList-method.html
051f009dc4b01d330ac8b3d099702270 *help/tigre-package.html
051f009dc4b01d330ac8b3d099702270 *help/tigre.html
89af847725a34888add950e515f3f77c *help/tigre.rdb
93ff96f7e2b246e7a5788013b50a2f45 *help/tigre.rdx
10b1534397f3bdbcaeb5580635ada908 *help/translateKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/translateKernDiagCompute.html
fb7178fd550231ecabf8ad72ae5e2944 *help/translateKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/translateKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/translateKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/translateKernParamInit.html
724fbd0c6abb57b3e2cb6296ad881750 *help/var.exprs,ExpressionTimeSeries-method.html
724fbd0c6abb57b3e2cb6296ad881750 *help/var.exprs.html
10b1534397f3bdbcaeb5580635ada908 *help/whiteKernCompute.html
10b1534397f3bdbcaeb5580635ada908 *help/whiteKernDiagCompute.html
b7eb1308c96e0ec875e475a5a4ce8dc0 *help/whiteKernDisplay.html
fb7178fd550231ecabf8ad72ae5e2944 *help/whiteKernExpandParam.html
0fa33d95db294a41829071b2f2ddef8d *help/whiteKernExtractParam.html
6fa145bc713f91c6ba22ac81e81b5956 *help/whiteKernGradient.html
21bd6162cf4c936286bcdfeb1b1aa9d8 *help/whiteKernParamInit.html
10b1534397f3bdbcaeb5580635ada908 *help/whiteXwhiteKernCompute.html
6fa145bc713f91c6ba22ac81e81b5956 *help/whiteXwhiteKernGradient.html
71c43cb8d106a2237877f6551dcd2b78 *help/write.scores,scoreList-method.html
71c43cb8d106a2237877f6551dcd2b78 *help/write.scores.html
36fa7d25d49375cbb2517aee0252d58b *html/00Index.html
a5a149a0f5b672c369875b85db3b43a5 *html/ExpressionTimeSeries-class.html
7e0dd8d51ff6d5538229c64b14e26fbf *html/GPLearn.html
ee3f77e3ebcd58a3c3ac7863acb2d421 *html/GPModel-class.html
cd261328cab002076364c5313ecf96cb *html/GPPlot.html
74b3155725a94b6bca27c0a92cecce08 *html/GPRankTargets.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e8f17f1c33fed6b00a37b18733458611 *html/SCGoptim.html
5f3f5b5882837baf59535e1dad104776 *html/drosophila_gpsim_fragment.html
377ea4f89af1e7ee84de71b65f2876c2 *html/drosophila_mmgmos_fragment.html
b43dbc9a50f1f97b244abd49652dc0af *html/expTransform.html
4937551c0ce3f9b68abad183bd6155dd *html/export.html
b168153cae5f84e59abde161d81c726d *html/generateModels.html
08c18adbf956102ec7b9cbff66b20d16 *html/gpsimCreate.html
6fd23600789268defe2ea1a8efee6fae *html/kernCompute.html
c990e4bb90c7ec8630e53492ced062ab *html/kernCreate.html
66f233c51275c4179cac0aa08f1541d2 *html/kernDiagGradX.html
ab6965c3976f08ea04aa91e0d1e0ad83 *html/kernGradient.html
de08ea036ff599b59f70313b02928b23 *html/lnDiffErfs.html
afaa651660924efd25bf2ba7f829a36d *html/modelDisplay.html
e9e26571b57cb356b4a39262c365a3c3 *html/modelExpandParam.html
22eece75cf7a10bedc1a1720fbd2d388 *html/modelExtractParam.html
3bb375e19e480128b3f24b3dddcf9113 *html/modelGradient.html
a5e9a4306ca23207785820e1102b797b *html/modelTieParam.html
88686112cfd4093a973dcac331df99e6 *html/optimiDefaultConstraint.html
d029f1a8ef4d454ce11e7383d5fcb7fd *html/plotTimeseries.html
30ba4f0effcac7accc03fc8c0591f1fa *html/processData.html
e881fead9ea72c6d4eb69443d5817d37 *html/scoreList-class.html
109f1e87cb94c7def1a6f75d919e2f3c *html/tigre-package.html
646c7693aa5475e34156aa99f8924486 *libs/i386/tigre.dll
9a7ca2c8f12ccfd7a597cd260edac17c *libs/x64/tigre.dll
