0c43ed269b3d58f6f3c47bc1f1c9f40d *CITATION
1b76113ba1b860c5207519c172ed80f1 *DESCRIPTION
f90344d8d2e0f4711bc6b2f3ef94f0f8 *INDEX
3ce5f5b1eb685bfb5dfec6067ed8a2e8 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
afda8bc09c58dfefc5062ad32535e4d7 *Meta/hsearch.rds
e959a2103aee4c6826f4ebd9d8cbfded *Meta/links.rds
d02451388188b34f889659dc69e24605 *Meta/nsInfo.rds
9c49201c79d6d6da06e0259d91ce2ca2 *Meta/package.rds
cc0a7808e06072b1591fe6849fceea92 *Meta/vignette.rds
da66c9f6ca66a4d45fbbcfcac2ee092a *NAMESPACE
2efec1ffbbbc958099ef4809aeba8c9f *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/systemPipeR
7d1c0dff4a80ab8884eefd8066748372 *R/systemPipeR.rdb
348e4cbb978085b5644fff55d359b68c *R/systemPipeR.rdx
757898e0b47e6fb0564e4e99b7f85c01 *doc/index.html
00d899515c6a1305d3161deb050e771e *doc/systemPipeR.R
a55e3d9a46b429e7fe3acff75cd891e3 *doc/systemPipeR.Rmd
e91fac772d89779cfb26c45c99d39a6b *doc/systemPipeR.html
221a793cf4db72995c5aa13341818b2b *doc/systemPipeR_CWL.R
abc68478c477486d6abebcf675593b2c *doc/systemPipeR_CWL.Rmd
57fe42518e3479cbe1e0530fc35c1d64 *doc/systemPipeR_CWL.html
8da01a65a12cc7e36c98e800da6116e7 *doc/systemPipeR_workflows.R
694eb1189a48f23a98e3609b0c687a46 *doc/systemPipeR_workflows.Rmd
d7fc68f6d5d56e206bce30e761f4de09 *doc/systemPipeR_workflows.html
2dfc76227438c9764f47c48e2bec4f74 *extdata/Makefile
a69a77c9f9594a49ccd98aca578aa083 *extdata/SPR_software.csv
78dda8645d323b468922f7e483be4c9c *extdata/alignStats.xls
f11c8bb8f32228337b590ea3f00b3ea1 *extdata/annotate_peaks.param
2930ca439a416d3be1692445c4570ae2 *extdata/annotate_vars.param
b56ac54dfe8a00a3c0cf69b9f8bb5412 *extdata/batchtools.sge.tmpl
d6101b3d20dd941fe80804bb501e37f3 *extdata/batchtools.slurm.tmpl
92f0f8ab7128a46c373df4c9bcf4a64f *extdata/batchtools.torque.tmpl
3dd1314bc7adebaf6a5e5c6baf32422a *extdata/bowtiePE.param
5ab954737e604f7db27511ad75bcd8d9 *extdata/bowtieSE.param
08d4b5aa439c40e5579c62040e084e0f *extdata/bwa.param
784a3074752b394df008f0fb9e6ab9fc *extdata/countDFeByg.xls
c6911d9f8ebc54a6775821f1dc44286a *extdata/count_rangesets.param
b430bc8fb548a51d84917a8c587280e6 *extdata/custom_Fct.R
f6bcd6702ab7170d482e9ef5619b535e *extdata/cwl/BUSCO/BUSCO.cwl
10b0e8c34dfa44cc5209137b8ee3e163 *extdata/cwl/BUSCO/BUSCO.yml
be1c31a3da11969190b610fc5263f20c *extdata/cwl/BUSCO/runME
ad2d494b8a42a669bbecf717367309f6 *extdata/cwl/MACS2/MACS2-input/macs2-input.cwl
5f6ceb2af55a96e664879cc68c9db2e1 *extdata/cwl/MACS2/MACS2-input/macs2.yml
eabccde8c21d7d9f6149e5e808e85266 *extdata/cwl/MACS2/MACS2-noinput/macs2.cwl
0e9d5221a833e64afdc7e58f7e01d998 *extdata/cwl/MACS2/MACS2-noinput/macs2.yml
b8a7271f18209dbcc61531e4caf18d6c *extdata/cwl/annotate_peaks/annotate-peaks.cwl
f8ad9796ec75f3dec67e7c72c5198c78 *extdata/cwl/annotate_peaks/annotate-peaks.yml
c3350044aee605286c8cf4a86a78c7b4 *extdata/cwl/blast/blastp/blastp.cwl
a502e64f201a545ecbb4457681373e3a *extdata/cwl/blast/blastp/blastp.yml
cceadd39e59ec17453ca7a3ec59b62c3 *extdata/cwl/bowtie2/bowtie2-idx/bowtie2-index.cwl
074c68ef3a8688a2c68efd0aab5066d8 *extdata/cwl/bowtie2/bowtie2-idx/bowtie2-index.yml
2952be803abd86d17ed94dc2c8b18efe *extdata/cwl/bowtie2/bowtie2-mi/bowtie2-mapping-mi.cwl
3b8caf2545e97b31c4dc917239806175 *extdata/cwl/bowtie2/bowtie2-mi/bowtie2-mapping-mi.yml
93d2a8f482ed0b9255147613c7efd6d0 *extdata/cwl/bowtie2/bowtie2-pe/bowtie2-mapping-pe.cwl
860d6e45cfd99eabc2df1f609d883696 *extdata/cwl/bowtie2/bowtie2-pe/bowtie2-mapping-pe.yml
c13224f961042c180c4d0a3e88e86e95 *extdata/cwl/bowtie2/bowtie2-se/bowtie2-mapping-se.cwl
4c6fe7be83e5c038a1e9ba7dab14862b *extdata/cwl/bowtie2/bowtie2-se/bowtie2-mapping-se.yml
f171daecf24a9d97d4f4ff75c5fb3469 *extdata/cwl/bwa/bwa-aln/bwa-aln.cwl
ea6c2642e0edc6f0b42dda097a01dc9b *extdata/cwl/bwa/bwa-aln/bwa-aln.yml
5e4846fe2ede5d84e4c8d712046e8786 *extdata/cwl/bwa/bwa-idx/bwa-index.cwl
dbd2f9296d4cfb487f6c2055722ef793 *extdata/cwl/bwa/bwa-idx/bwa-index.yml
5e09ec0d877b15d4cc2e9cfa4dc4d75a *extdata/cwl/bwa/bwa-mem-pe/bwa-mem-pe.cwl
19f4aa64fb8206751c229a01ccdb14b6 *extdata/cwl/bwa/bwa-mem-pe/bwa-mem-pe.yml
a99bbeac41f843ae70615b879538cd6e *extdata/cwl/bwa/bwa-mem-se/bwa-mem-se.cwl
0ef2cacf62fc0991f4406d7589d65ea6 *extdata/cwl/bwa/bwa-mem-se/bwa-mem-se.yml
571d37b728d9543cfdbdd30cc7336f33 *extdata/cwl/bwa/bwa-pe/bwa-pe.cwl
19f4aa64fb8206751c229a01ccdb14b6 *extdata/cwl/bwa/bwa-pe/bwa-pe.yml
f82c58819859ecfa0eb24ec265cac451 *extdata/cwl/bwa/bwa-samse/bwa-samse.cwl
7727f73b28c6a0e9f3f7e2951f7228c9 *extdata/cwl/bwa/bwa-samse/bwa-samse.yml
a99bbeac41f843ae70615b879538cd6e *extdata/cwl/bwa/bwa-se/bwa-se.cwl
0ef2cacf62fc0991f4406d7589d65ea6 *extdata/cwl/bwa/bwa-se/bwa-se.yml
542a6f92bcec946ce28492ffd44f9b4b *extdata/cwl/count_rangesets/count_rangesets.cwl
87fff4c7241c85412837bd1e1951847d *extdata/cwl/count_rangesets/count_rangesets.yml
47b20dd410fd56413aabf5d71ca19270 *extdata/cwl/cutadapt/cutadapt.cwl
34f424d1b167136ff2bc3d3300191c3d *extdata/cwl/cutadapt/cutadapt.yml
9fc1f30e8d22f146fe430467fbb0a13d *extdata/cwl/cutadapt/cutadapt_run1.yml
a749f49000c8139c7b846253b0a2f9b4 *extdata/cwl/example/example.cwl
da84395c5687286a117e1ab771947b03 *extdata/cwl/example/example.yml
8a9362e70c8b5c591e7e98bcdb25f096 *extdata/cwl/example/example_single.yml
5a9ea0571ad81af417339793bb909f16 *extdata/cwl/example/targets_example.txt
bdd2edbc16f9a2c5381faea96cdd7f5e *extdata/cwl/fastq-dump/fastq-dump.cwl
41c4c44a4fd2cc7c835d24f95e2fd795 *extdata/cwl/fastq-dump/fastq-dump.yml
470ebea14cd3d308cbb657fdd65f12dd *extdata/cwl/fastqc/fastqc.cwl
c063d42d4c202b010e5708e0880aefc0 *extdata/cwl/fastqc/fastqc.yml
8b7d9b5b56e646790d76580089926420 *extdata/cwl/fastx_toolkit/fastx_clipper.cwl
ab515ca5b267b71f815c26b79886df51 *extdata/cwl/fastx_toolkit/fastx_clipper.yml
0d056d2308656d54d957c7f6421025ed *extdata/cwl/fastx_toolkit/fastx_clipper_cwl.cwl
a5eca39e2fab840599b5c3b5ed646369 *extdata/cwl/fastx_toolkit/fastx_clipper_sample.yml
0264eec98b631e515e0c1cf6fd0144dd *extdata/cwl/gatk/bwa-index.cwl
5460201a1aa290de2884c1f9ed0066a2 *extdata/cwl/gatk/bwa-pe.cwl
eec0150fcbec4407df535b615f51d873 *extdata/cwl/gatk/fasta_dict.cwl
8f72c86dfeaf1bf4d5a72381998e71d6 *extdata/cwl/gatk/fasta_faidx.cwl
b71356111ae5b4432915b3c0b26d8293 *extdata/cwl/gatk/gatk.yaml
2ec7db6323d0d8a31cc9be37ca10dc6b *extdata/cwl/gatk/gatk_fastq2ubam.cwl
92761ca77b29c9851af519a8360df3aa *extdata/cwl/gatk/gatk_fixtag.cwl
e59adecfbe59a3b26888c7fc32e50e3c *extdata/cwl/gatk/gatk_genomicsDBImport.cwl
b159f2bf3d9b8249d89dcb0269ea4351 *extdata/cwl/gatk/gatk_genomicsDBImport.sh
c96504ede752cae32e7a2de2c8850ada *extdata/cwl/gatk/gatk_genotypeGVCFs.cwl
9c9178e982a3f6ebdf9a0adaf830cff2 *extdata/cwl/gatk/gatk_haplotypecaller.cwl
c00b9c20baf6adc90c92873a4ca5a52e *extdata/cwl/gatk/gatk_markduplicates.cwl
f6328528317795de046e1ed278df26f3 *extdata/cwl/gatk/gatk_mergebams.cwl
d8b02e18e3967bb73633a689f3d3a0cf *extdata/cwl/gatk/gatk_select_variant.cwl
ab1d5764848e0a7334eec76e7b2ef5c8 *extdata/cwl/gatk/gatk_sort.cwl
c479c3e866bbdc2efcf9914334a4aaf7 *extdata/cwl/gatk/gatk_variantFiltration.cwl
f2e9533282a015dba0be1cab2dca1cb7 *extdata/cwl/gatk/gatk_variantFiltration.sh
f9ff79b0096a19afa68a880cdf8c3e9a *extdata/cwl/gsnap/gsnap-idx/gsnap-index.cwl
15ca93f47e038af192f65449c398af46 *extdata/cwl/gsnap/gsnap-idx/gsnap-index.yml
ecbc477a42d13370b3957f90cf1807e4 *extdata/cwl/gsnap/gsnap-pe/gsnap-mapping-pe.cwl
e180fe69b680a9b721ca9e11703a1c5e *extdata/cwl/gsnap/gsnap-pe/gsnap-mapping-pe.yml
dfddbed40adb575a757d616956e9f6e1 *extdata/cwl/gunzip/gunzip.cwl
2bf9837b465126dac540e6eefdea663b *extdata/cwl/gunzip/gunzip.yml
5b946d38a49b7253fa77b605da8ca29d *extdata/cwl/hisat2/hisat2-idx/hisat2-index.cwl
e053c7f8e6878c685b1b48df74b95734 *extdata/cwl/hisat2/hisat2-idx/hisat2-index.yml
1433c7bad84c86f21f055daccc799232 *extdata/cwl/hisat2/hisat2-pe/hisat2-mapping-pe.cwl
bb0c848659a9860b00cab1c6c7138ff7 *extdata/cwl/hisat2/hisat2-pe/hisat2-mapping-pe.yml
bece5fff5abbbfb37c821f3a7b7612a4 *extdata/cwl/hisat2/hisat2-se/hisat2-mapping-se.cwl
5d21252ade2596c7f685e167539b64ce *extdata/cwl/hisat2/hisat2-se/hisat2-mapping-se.yml
dc83b041b0855b9a91dec3771369896e *extdata/cwl/kallisto/kallisto-index.cwl
82694d5979d30174f687df74de8c652e *extdata/cwl/kallisto/kallisto.cwl
bfaf9f1e1a2e5c41632f97c88d7ff3c7 *extdata/cwl/kallisto/kallisto.yml
37ac2de807e23ea176edbe4917dd5a18 *extdata/cwl/kallisto/runME
6b4aa5e470aadf09f4e241f782bc914c *extdata/cwl/kallisto/workflow-kallisto.cwl
b45e995b9d19171536d301adc2f13a62 *extdata/cwl/mergeBamByFactor/merge-bam.cwl
3b77796ba8545f7f54cc3473c03850a2 *extdata/cwl/mergeBamByFactor/merge-bam.yml
3ea7597739e1ab6cd017f215825843ce *extdata/cwl/picard/markduplicates/picard_markduplicates.cwl
e791c9e6c320147245a959322a082cf8 *extdata/cwl/picard/markduplicates/picard_markduplicates.yml
8418a0d62a03e41843f478e71fbf01f7 *extdata/cwl/preprocessReads/trim-pe/trim-pe.cwl
f3ad0e3059effd3cfb2723b224313dc7 *extdata/cwl/preprocessReads/trim-pe/trim-pe.yml
816d9e802151975c4c951b357d6d971e *extdata/cwl/preprocessReads/trim-se/trim-se.cwl
591ec4f02d59f137f7c0e77ebbda9837 *extdata/cwl/preprocessReads/trim-se/trim-se.yml
f266993b828d16d182cb5ae9acb8a1bc *extdata/cwl/rsubread/rsubread-idx/rsubread-index.cwl
a202c6f0ae327084e9ebdd7015bb16ff *extdata/cwl/rsubread/rsubread-idx/rsubread-index.yml
402eece40e1b5e30da72262ef73c90c9 *extdata/cwl/rsubread/rsubread-se/rsubread-mapping-se.cwl
41b84d7f1b22e68914a7e6c026abda95 *extdata/cwl/rsubread/rsubread-se/rsubread-mapping-se.yml
12b543f2caaa637869ae25d8c7a400ea *extdata/cwl/rundiff/rundiff.cwl
b97ca177a782e76f50f080515f073f97 *extdata/cwl/rundiff/rundiff.yml
d9efe31a8181665e53cb5d0e54dc601b *extdata/cwl/samtools/samtools-index.cwl
c36e837ac995448232323e4710ed5015 *extdata/cwl/samtools/samtools-index.yml
72534747d6f071e492817da30e8c88f7 *extdata/cwl/samtools/samtools-sort.cwl
220ace1269ea979e079c0d3f271d7812 *extdata/cwl/samtools/samtools-sort.yml
299399dfd6706ed4eaf6de44f9606a73 *extdata/cwl/samtools/samtools-view.cwl
aaacae9ba755d21358115f6156025a5c *extdata/cwl/samtools/samtools-view.yml
c9c1d7c07a1831cf2d25854b5c66676d *extdata/cwl/star/runMe
c71d4837d598de7e7b52ec3d77d3d874 *extdata/cwl/star/runMe_star_picard.Rmd
7f00b440aa0f8de107f2428397f99350 *extdata/cwl/star/star-idx/star-index.cwl
279063850b16234314a88c41acb2350a *extdata/cwl/star/star-idx/star-index.yml
a1fe0254c859ce203d3c6145522a155c *extdata/cwl/star/star-pe/star-mapping-pe.cwl
9a87566f01195c595a3da298e0806450 *extdata/cwl/star/star-pe/star-mapping-pe.yml
f67d0116149534ba54327a0348bc6b29 *extdata/cwl/star/star-se/star-mapping-se.cwl
cc41f54f6422e37434aaa41b816d7167 *extdata/cwl/star/star-se/star-mapping-se.yml
33bdab7d0602ddfc668fa53f0cb87513 *extdata/cwl/star/workflow_star-pe-sam_samtools.cwl
6aa01542cc2280d1188935e715da0d70 *extdata/cwl/test/test.cwl
259c043e12754d7b64d3bea8e91ee024 *extdata/cwl/test/test.yml
4f6455082e226f8178f1b9b264098adb *extdata/cwl/tophat2/tophat2-pe/tophat2-mapping-pe.cwl
a236733cbceb98f71bb7b67586743538 *extdata/cwl/tophat2/tophat2-pe/tophat2-mapping-pe.yml
b5f69ba05cb5c33c569a589746316342 *extdata/cwl/tophat2/tophat2-se/tophat2-mapping-se.cwl
d77a1a65e88e9581ff365c346608a032 *extdata/cwl/tophat2/tophat2-se/tophat2-mapping-se.yml
4332c7313f61f054258ef3183ad2b370 *extdata/cwl/trim_galore/trim_galore-pe/trim_galore-pe.cwl
0cf3af2c43f8c687ae8c0624da69da24 *extdata/cwl/trim_galore/trim_galore-pe/trim_galore-pe.yml
ef9f218ebde44c1068443eb85ed4599c *extdata/cwl/trim_galore/trim_galore-se/trim_galore-se.cwl
81f30b192f792647b8368f90dd4daa9c *extdata/cwl/trim_galore/trim_galore-se/trim_galore-se.yml
f770eef02f17989f8c62069900a9fafe *extdata/cwl/trimmomatic/trimmomatic-pe/trimmomatic-pe.cwl
6ce905e9226c0a161aecd50d8db0ca92 *extdata/cwl/trimmomatic/trimmomatic-pe/trimmomatic-pe.yml
5a00ddd355642e84938301850ebe79f0 *extdata/cwl/trimmomatic/trimmomatic-se/trimmomatic-se.cwl
078c239a55434136335ef053affbeb45 *extdata/cwl/trimmomatic/trimmomatic-se/trimmomatic-se.yml
1056c6328f74e6b0f57f83ef92a781e6 *extdata/cwl/varseq/annotate.cwl
1f851380858e6e67470ed1754754aadc *extdata/cwl/varseq/combine.cwl
51cd86db31f5c5f71bde57e1a79eb44e *extdata/cwl/varseq/filter.cwl
d06cbf7091c24cf9bd39c5afa5873b6a *extdata/cwl/varseq/varseq.yml
b24da5219c28140ba5463f235180e12c *extdata/cwl/workflow-bcftools/bcftools-call.cwl
808d94b0df0022bdf6dcf849ea71b350 *extdata/cwl/workflow-bcftools/bcftools.cwl
3d23f205be4bb97e3132cdd36080b63a *extdata/cwl/workflow-bcftools/bcftools.yml
d55562228ef70b139adb64427de66278 *extdata/cwl/workflow-bcftools/samtools-index.cwl
1de676e598818d5b16f5fb2714bf7a60 *extdata/cwl/workflow-bcftools/samtools-sort.cwl
304d725d22ea3f8c8cbc67882d8158a6 *extdata/cwl/workflow-bcftools/samtools_markduplicates.cwl
26b49975cea219e90b860b19bfeef6f6 *extdata/cwl/workflow-bcftools/workflow_bcftools.cwl
0cdf5ca628064e5234504265638c101d *extdata/cwl/workflow-bwa-aln/workflow_bwa-aln-se.cwl
96e719886528320a82308ebebe6cf384 *extdata/cwl/workflow-bwa-aln/workflow_bwa-aln-se.yml
ef0b0b7e72d840570eeaed4b7add1976 *extdata/cwl/workflow-hisat2/workflow-hisat2-pe/workflow_hisat2-pe.cwl
0c7bb5d35129b2f55c34d3f478f1bfb1 *extdata/cwl/workflow-hisat2/workflow-hisat2-pe/workflow_hisat2-pe.yml
87c865621678cfd6c850bf980eff478f *extdata/cwl/workflow-hisat2/workflow-hisat2-se/workflow_hisat2-se.cwl
510bb691438fece4116cb413b5a5307d *extdata/cwl/workflow-hisat2/workflow-hisat2-se/workflow_hisat2-se.yml
a80b83abfb0c20e49ae8a20e02bd8210 *extdata/docopt.R/gsnap/gsnap.doc.R
0ec60142b201f97921e6a87f120db4c4 *extdata/docopt.R/gsnap/gsnap_idx.doc.R
dd6d76edff3a0fdb745d262986eee40b *extdata/docopt.R/rsubread/rsubread.doc.R
a11980ef04b43cd7e88c186db7cbd165 *extdata/docopt.R/rsubread/rsubread_idx.doc.R
a140076686646a8a07fe9c9a8ce6cd91 *extdata/docopt.R/test/test.doc.R
54e3d6c10356c74053ca1924b8576e21 *extdata/filter_gatk.param
7dcf24ed0132ec529de84fd04c14b202 *extdata/filter_sambcf.param
7cccff803c025141d49159ebe402aece *extdata/filter_vartools.param
78703d16e099b08f184a7b0cae1f08a0 *extdata/gatk.param
b394006139d9d91099117f3916fc4c31 *extdata/gatk_run.sh
ee61c831d0762f41d6182fb4e2d36c8a *extdata/gsnap.param
fc13720d3fe63fcdc3d7a5cfede7a9ed *extdata/hisat2.param
be7fc12857ebb0c00499a5c4e55bd487 *extdata/hisat2PE.param
f95f0134cbad66a16c8307056a8ab4cc *extdata/macs2.param
dca9b2f81e39bad7b57af01f094bc56e *extdata/macs2_noinput.param
9cca89e6cd2ea6e3b8a4e3037d2891e3 *extdata/rpkmDFeByg.xls
3d30cad15d64aebc718192ef099fecd5 *extdata/rsubread.param
7004f0a88e037520b4a65ddd9a85999e *extdata/rundiff.param
205f33a7c2dfc67418ec0303621a141c *extdata/sambcf.param
939b5de645b9bb23b26564c42cc90b10 *extdata/sambcf_run.sh
9cf4caaa9a2dfb19eb995fd70d97e06d *extdata/targets.txt
a258ef22ea89fd10cb48316d8a492ee1 *extdata/targetsPE.txt
d28177ccf41e00d7375d7db800f159c6 *extdata/targetsPE_chip.txt
ecd47d62b4b4f37d60f51b8a58e961b0 *extdata/targets_chip.txt
c67415d483577a02b783755824ba886f *extdata/tophat.param
5b96dca6a17c61b43b5db71e20b54c30 *extdata/trim.param
a3f4e242449c101af6f2c9056696d3a1 *extdata/trimPE.param
5904e0c94dbae1e112a42b42ab9f574b *extdata/trim_galore.param
d4388913521da15431b7c94c17212f5a *extdata/trim_galore_run.sh
f57aa9edff5506cc819e15368b8ab9ad *extdata/vartools.param
381b5fe4485a0396ebedd4771271a5b1 *help/$,EnvModules-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/$,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/$,SYSargsList-method.html
7df895ac36f27a1eaa73d48445942b50 *help/AnIndex
381b5fe4485a0396ebedd4771271a5b1 *help/EnvModules,EnvModules-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/EnvModules-class.html
29e956d55d0d449a5d42f6bfa0c3546d *help/GOCluster_Report.html
29e956d55d0d449a5d42f6bfa0c3546d *help/GOHyperGAll.html
29e956d55d0d449a5d42f6bfa0c3546d *help/GOHyperGAll_Simplify.html
29e956d55d0d449a5d42f6bfa0c3546d *help/GOHyperGAll_Subset.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/INTERSECTset-class.html
a1d926947241336615c59c04269636b3 *help/ParamFiles.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/SEobj,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/SEobj.html
6e96a0bc1788e7ca7ff6ca8df581b499 *help/SPRdata.html
a3409a5e4d92b25f2088f9cac03cfb42 *help/SPRproject.html
10c827518dccf55c0661983a1c20f89a *help/SYSargs-class.html
68f5d0de6bd3d4d4a44268ea71813423 *help/SYSargs2-class.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/SYSargsList-class.html
10c827518dccf55c0661983a1c20f89a *help/SampleName,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/SampleName-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/SampleName.html
39ed3bfdaed387d06f1712f0474d04d6 *help/VENNset-class.html
381b5fe4485a0396ebedd4771271a5b1 *help/[,EnvModules,ANY,ANY,ANY-method.html
10c827518dccf55c0661983a1c20f89a *help/[,SYSargs,ANY,ANY,ANY-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/[,SYSargs2,ANY,ANY,ANY-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/[,SYSargsList,ANY,ANY,ANY-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/[[,EnvModules,ANY,ANY-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/[[,EnvModules,ANY,missing-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/[[,SYSargs2,ANY,missing-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/[[,SYSargsList,ANY,ANY,missing-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/[[,SYSargsList,ANY,ANY-method.html
e6158199db2add3b9905eb8983163174 *help/add-methods.html
e6158199db2add3b9905eb8983163174 *help/addAssay,SummarizedExperiment-method.html
e6158199db2add3b9905eb8983163174 *help/addAssay-methods.html
e6158199db2add3b9905eb8983163174 *help/addAssay.html
e6158199db2add3b9905eb8983163174 *help/addMetadata,SummarizedExperiment-method.html
e6158199db2add3b9905eb8983163174 *help/addMetadata-methods.html
e6158199db2add3b9905eb8983163174 *help/addMetadata.html
df2ab023ec4ce8dc6d16fec12f9d0328 *help/aliases.rds
01a536db843eadb9916fb9e917911b67 *help/alignStats.html
a1d926947241336615c59c04269636b3 *help/appendParam.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/as.list,INTERSECTset-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/as.list,VENNset-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/available_modules,EnvModules-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/baseCommand,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/baseCommand.html
a6ff0c19f49d7d972f40424283df99cc *help/catDB-class.html
a6ff0c19f49d7d972f40424283df99cc *help/catlist,catDB-method.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/catlist-methods.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/catlist.html
a6ff0c19f49d7d972f40424283df99cc *help/catmap,catDB-method.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/catmap-methods.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/catmap.html
8184a01ea8e6955c88f2072498cd5fa7 *help/check.output.html
68f5d0de6bd3d4d4a44268ea71813423 *help/clt,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/clt.html
e0e59e4a17124b7ddff662423a451866 *help/clusterRun.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cmdToCwl,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cmdToCwl.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cmdlist,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/cmdlist,SYSargsList-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cmdlist.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/codeSteps,SYSargsList-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/coerce,EnvModules,list-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/coerce,SYSargs2,list-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/coerce,SYSargsList,list-method.html
381b5fe4485a0396ebedd4771271a5b1 *help/coerce,list,EnvModules-method.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/coerce,list,INTERSECTset-method.html
10c827518dccf55c0661983a1c20f89a *help/coerce,list,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/coerce,list,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/coerce,list,SYSargsList-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/coerce,list,VENNset-method.html
a6ff0c19f49d7d972f40424283df99cc *help/coerce,list,catDB-method.html
3f4d71074d057cdfdc0adeb007b77b64 *help/combineVarReports.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/complexitylevels,INTERSECTset-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/complexitylevels,VENNset-method.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/complexitylevels-methods.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/complexitylevels.html
0d57790242ef1acb0f266fbdc36d1df6 *help/config.param.html
238731fd37d34b74d0eefbab56cc7dbb *help/configWF.html
10c827518dccf55c0661983a1c20f89a *help/cores,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/cores-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/cores.html
e191af8d0d7f41f048b015b844f408c4 *help/countRangeset.html
650816cb52b333971cd9baf972874878 *help/createParamFiles.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cwlfiles,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/cwlfiles.html
381b5fe4485a0396ebedd4771271a5b1 *help/default_modules,EnvModules-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/dependency,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/dependency.html
a3c3dd37df08bdc32d64e96da8c98f97 *help/evalCode.html
74190371326c2aa919c86189ce360e93 *help/featureCoverage.html
ace7993f81a5e56d281203d2416bbcb1 *help/featuretypeCounts.html
8d00666d4f4989f31edb7ff73c290b66 *help/filterDEGs.html
4afcd58d378e047dfb57de246e477fbb *help/filterVars.html
88284e6fcc2aca0b41f295820bf2bb1f *help/genFeatures.html
06b599dd5c6c08e2f0fe85bee0d84fd2 *help/getQsubargs.html
29e956d55d0d449a5d42f6bfa0c3546d *help/goBarplot.html
a6ff0c19f49d7d972f40424283df99cc *help/idconv,catDB-method.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/idconv-methods.html
2ae8db86cf52c2b575cd5ccdbe9fa5a2 *help/idconv.html
10c827518dccf55c0661983a1c20f89a *help/infile1,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/infile1,SYSargs2-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/infile1-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/infile1.html
10c827518dccf55c0661983a1c20f89a *help/infile2,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/infile2,SYSargs2-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/infile2-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/infile2.html
a3409a5e4d92b25f2088f9cac03cfb42 *help/initProject.html
a3409a5e4d92b25f2088f9cac03cfb42 *help/initWF.html
68f5d0de6bd3d4d4a44268ea71813423 *help/input,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/input.html
68f5d0de6bd3d4d4a44268ea71813423 *help/inputvars,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/inputvars.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/intersectlist,INTERSECTset-method.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/intersectlist-methods.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/intersectlist.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/intersectmatrix,INTERSECTset-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/intersectmatrix,VENNset-method.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/intersectmatrix-methods.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/intersectmatrix.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/length,INTERSECTset-method.html
10c827518dccf55c0661983a1c20f89a *help/length,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/length,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/length,SYSargsList-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/length,VENNset-method.html
33f08048efe06fbf1bab213b3c348ae9 *help/loadWF.html
33f08048efe06fbf1bab213b3c348ae9 *help/loadWorkflow.html
381b5fe4485a0396ebedd4771271a5b1 *help/loaded_modules,EnvModules-method.html
29e956d55d0d449a5d42f6bfa0c3546d *help/makeCATdb.html
96f74738ba21269faa843da09a4e847b *help/mergeBamByFactor.html
880808e87db5edc45566b36ae0d7cc9b *help/module.html
880808e87db5edc45566b36ae0d7cc9b *help/moduleAvail.html
880808e87db5edc45566b36ae0d7cc9b *help/moduleClear.html
880808e87db5edc45566b36ae0d7cc9b *help/moduleInit.html
880808e87db5edc45566b36ae0d7cc9b *help/moduleUnload.html
381b5fe4485a0396ebedd4771271a5b1 *help/modulecmd,EnvModules-method.html
880808e87db5edc45566b36ae0d7cc9b *help/modulelist.html
880808e87db5edc45566b36ae0d7cc9b *help/moduleload.html
10c827518dccf55c0661983a1c20f89a *help/modules,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/modules,SYSargs2-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/modules-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/modules.html
381b5fe4485a0396ebedd4771271a5b1 *help/names,EnvModules-method.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/names,INTERSECTset-method.html
10c827518dccf55c0661983a1c20f89a *help/names,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/names,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/names,SYSargsList-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/names,VENNset-method.html
a6ff0c19f49d7d972f40424283df99cc *help/names,catDB-method.html
9fffdb0de80893dc2137d6b21f797c3e *help/olBarplot.html
c8567a6060628103b36c39ffd9ed6c86 *help/olRanges.html
10c827518dccf55c0661983a1c20f89a *help/other,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/other-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/other.html
10c827518dccf55c0661983a1c20f89a *help/outfile1,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/outfile1-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/outfile1.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/outfiles,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/outfiles.html
10c827518dccf55c0661983a1c20f89a *help/outpaths,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/outpaths-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/outpaths.html
68f5d0de6bd3d4d4a44268ea71813423 *help/output,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/output.html
12cef8bf944c4cca06972911159d00b8 *help/output_update.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/overLapper.html
80e437700e6d862ab3a52f94f9386719 *help/paths.rds
b419d03c1b7c3bf89837c4d36da9a567 *help/plotWF.html
d073e72ae9b625668c3199a2c545307f *help/plotfeatureCoverage.html
69655585d6d74b9f98b48c91f8e6a297 *help/plotfeaturetypeCounts.html
d95113d31aa9c1abc1978719ce78b0fa *help/predORF.html
b566a4d9d5cb35c0a249c25d032cf9af *help/preprocessReads.html
a1d926947241336615c59c04269636b3 *help/printParam.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/projectWF,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/projectWF.html
e6700a7e06c11a4eab3e37a8e5ca4dbb *help/qsubRun.html
87feece4fdb2692e610ee277528d5141 *help/readComp.html
10c827518dccf55c0661983a1c20f89a *help/reference,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/reference-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/reference.html
a1d926947241336615c59c04269636b3 *help/renameParam.html
5468f541cdd3099558aaf0c78e4cab4a *help/renderReport.html
956ff025acd8a4b34f7e57122a15a654 *help/renderWF.html
a1d926947241336615c59c04269636b3 *help/replaceParam.html
10c827518dccf55c0661983a1c20f89a *help/results,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/results-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/results.html
0e795475ad862bc52c56bea18f27a7d7 *help/returnRPKM.html
affc228191ad081e07fd86a4d4133fe9 *help/runCommandline.html
d33f6106d57252800a15b7be1481cba5 *help/runDiff.html
21d9fd536c6c540de3eca7df06bee2db *help/runWF.html
5731e5e37260073482a168c920f2d20b *help/run_DESeq2.html
4a9e1b06dfa03ab258a00022da9f4aaf *help/run_edgeR.html
963b7e0598194c9703ca6b50d0372963 *help/scaleRanges.html
52ec039fa0775c5beb99559c0a233ff4 *help/seeFastq.html
52ec039fa0775c5beb99559c0a233ff4 *help/seeFastqPlot.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/setlist,INTERSECTset-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/setlist,VENNset-method.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/setlist-methods.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/setlist.html
381b5fe4485a0396ebedd4771271a5b1 *help/show,EnvModules-method.html
4849e9b2dbdcdab8e6e05b8f536a5f8d *help/show,INTERSECTset-method.html
10c827518dccf55c0661983a1c20f89a *help/show,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/show,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/show,SYSargsList-method.html
39ed3bfdaed387d06f1712f0474d04d6 *help/show,VENNset-method.html
a6ff0c19f49d7d972f40424283df99cc *help/show,catDB-method.html
10c827518dccf55c0661983a1c20f89a *help/software,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/software-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/software.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/sprconfig,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/sprconfig.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/statusWF,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/statusWF.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/stepsWF,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/stepsWF.html
a1d926947241336615c59c04269636b3 *help/subsetParam.html
1597683e24c88e884f3a70c9d4d5d829 *help/subsetWF.html
8f3d9f537f31abaa960893af6abb10f0 *help/symLink2bam.html
10c827518dccf55c0661983a1c20f89a *help/sysargs,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/sysargs-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/sysargs.html
68f5d0de6bd3d4d4a44268ea71813423 *help/sysargs2,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/sysargs2.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/sysargslist,SYSargsList-method.html
c6c5e3155d6ed29b9c72003631d49394 *help/sysargslist.html
f3c3ada5fcf130df607ac9554aaccba2 *help/systemArgs.html
71943e8d44f1d9919b9259f83c4f455d *help/systemPipeR-package.html
5e80504c1669b8c8199f6524630ff3b7 *help/systemPipeR.rdb
3ee2917e4ed2160411b90b8c329e343c *help/systemPipeR.rdx
68f5d0de6bd3d4d4a44268ea71813423 *help/targets,SYSargs2-method.html
ab8b66837e07fd1c9d5f49ba3ecdf4ee *help/targets.as.df.html
68f5d0de6bd3d4d4a44268ea71813423 *help/targets.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/targetsWF,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/targetsWF.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/targets_connection,SYSargsList-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/targets_connection.html
10c827518dccf55c0661983a1c20f89a *help/targetsheader,SYSargs-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/targetsheader,SYSargs2-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsheader-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsheader.html
10c827518dccf55c0661983a1c20f89a *help/targetsin,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsin-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsin.html
10c827518dccf55c0661983a1c20f89a *help/targetsout,SYSargs-method.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsout-methods.html
8d1f93203bbf47d07434fbba2e4a34fc *help/targetsout.html
5f86bad84bfcdbc857f235c8068712f0 *help/tryCL.html
b9b64d7c2fff11bb6f23a654a37bebae *help/tryPath.html
3f4d71074d057cdfdc0adeb007b77b64 *help/varSummary.html
3f4d71074d057cdfdc0adeb007b77b64 *help/variantReport.html
74aea58e43b41df98f9922a071a95329 *help/vennPlot.html
39ed3bfdaed387d06f1712f0474d04d6 *help/vennlist,VENNset-method.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/vennlist-methods.html
7d850d6e094c3e5f5eb02c2522ad6a4e *help/vennlist.html
68f5d0de6bd3d4d4a44268ea71813423 *help/wf,SYSargs2-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/wf.html
650816cb52b333971cd9baf972874878 *help/writeParamFiles.html
d5f62eccd3143271122450465fb88d11 *help/writeTargetsRef.html
82efc1a46e31c111838cccc791b8b1a1 *help/writeTargetsout.html
68f5d0de6bd3d4d4a44268ea71813423 *help/yamlinput,SYSargs2-method.html
b2cb1b158d8d272a05d43adf9c7744c6 *help/yamlinput,SYSargsList-method.html
68f5d0de6bd3d4d4a44268ea71813423 *help/yamlinput.html
f672caba1c4eb754da4974ba0292e278 *html/00Index.html
ac3bc1fa97a674e1892bb37451555d96 *html/EnvModules-class.html
b677b86597ef716029b8032baa909e2a *html/GOHyperGAll.html
6f101ea5d94e91df6295c04ad9a06597 *html/INTERSECTset-class.html
d13a19d411964e37111d758614be516e *html/ParamFiles.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e3ef1ed7d48470dc5ed8f96d58301080 *html/SPRdata.html
571fc8e20db3866d2d5c82aa08370c85 *html/SYSargs-class.html
db2451713d244474a60459e39459869b *html/SYSargs2-class.html
0ceca77f4c6947197f6156a799899f7e *html/SYSargsList-class.html
0da389994a8175e43400aecac2cff3a8 *html/SYSargsList.html
aedd1b7994564fab7acd6e052833e202 *html/VENNset-class.html
55b7bdb892527d3ebb20c527b555664d *html/add-methods.html
a83e8249e93e3f13a6678072d7c2267f *html/alignStats.html
799f37dc4f52de3ebe0ed4b9b35afb13 *html/catDB-class.html
a38f0fef11a86fd0d79686bbec7dac1b *html/catmap.html
69daff87e1c8ac0aaf79ed322846e684 *html/check.output.html
9f5ba3a72cf7336914f1b7d22550fbef *html/clusterRun.html
bb91b1aa07c9e170de2b022459532fe6 *html/config.param.html
a08aae1bd8fb7b6462e882d15a71188d *html/configWF.html
24bade074179a84cca0182f588cd009c *html/countRangeset.html
dd5579666b2e90f591e111ab6464ae30 *html/createParamFiles.html
881b71e2deb4e268280eff7b218f9835 *html/evalCode.html
2d2fe16e91c9208dfb8658041ee8b6b3 *html/featureCoverage.html
0114f273494de7afa94bc2820df5e71f *html/featuretypeCounts.html
b2cb175645b384ac00daa98fe1bf4e6e *html/filterDEGs.html
57d6f03dc41fdf08fdf1fc097ad47422 *html/filterVars.html
111779deee211813d4a39da912311622 *html/genFeatures.html
cdd43f678a83a154598cd592c78ef389 *html/getQsubargs.html
068dd041793649cd56cd6844ae355924 *html/initWF.html
a72f609d142afa5469c123181785115c *html/loadWorkflow.html
3479b1d70500296cb7d18effddd95d45 *html/mergeBamByFactor.html
e2970db8e7c039a06077068bd4428e2c *html/moduleload.html
96728acadb542a917478bf22973169ec *html/olBarplot.html
036458dd15b602892bef021cbee405f9 *html/olRanges.html
5029dead7704d681ee9a84fd518d2ea1 *html/output_update.html
4a554c07b0f041a980d61035da72f936 *html/overLapper.html
a5e0e0981f339d03e5793267313390bb *html/plotWF.html
2127e7310a2cf056f57da6026b3ddaef *html/plotfeatureCoverage.html
3cde32ebb601d46f86830716af8474b3 *html/plotfeaturetypeCounts.html
41758b41d87189ea028b263d95ba8b73 *html/predORF.html
3b7a205e8c9d82fc1c77742e88d28096 *html/preprocessReads.html
9f9512105b968ad58c58d4e307e92247 *html/qsubRun.html
636cf6060e4548eb9d4eac0b8cf23912 *html/readComp.html
bba61b2d17f51a5d8d16b270564aa6d6 *html/renderReport.html
daf3c5edb42020c83273fd9f0da36779 *html/renderWF.html
82fc800e4dd9d59e1c9a1f9507d6ad1a *html/returnRPKM.html
56aac2d3e79c05982059420977e91bbd *html/runCommandline.html
233afb306b31b961deb3bf95f1676212 *html/runDiff.html
5d01cf192828347237ef348beec8575e *html/runWF.html
c6404900c771350f273280b0d2620b73 *html/run_DESeq2.html
165a1cbb520fba4c4b600d3dae8d0fd7 *html/run_edgeR.html
19699e0b2b51778b531746f76da63871 *html/scaleRanges.html
4b74f37d2663b4c19c1d7a65c618ce28 *html/seeFastq.html
1c22d103b13042835fb5d205a22ad898 *html/subsetWF.html
578d086bc8c8349f388c47bfb40b632b *html/symLink2bam.html
e318b091e7bd62e89d07b74acda885a0 *html/sysargs.html
2ebb919d84252ba475f574dcb64843aa *html/systemArgs.html
e6765efec48d47e2ecb74fd923007d9c *html/systemPipeR-package.html
4c7936bb6fd3b8e3a66808788d9d2081 *html/targets.as.df.html
d58cbc7849fea3cfe447adb10d936a96 *html/tryCL.html
7e2a1ff41643840da461d517fbe09294 *html/tryPath.html
8b3b473c3d07fa8e8d62d9cd377853c7 *html/variantReport.html
42ab46b0d5601be1bb95e7e0dd58c387 *html/vennPlot.html
d862f9cd1976bba5b18b427a1a781f7a *html/writeTargetsRef.html
b2266b92fc0fa5850cce311fdc6c4c9f *html/writeTargetsout.html
