4a45c71799006d8754b805cda43ab5a6 *CITATION
63addb1d9f204c333091d248a34c6765 *DESCRIPTION
b5c91cc02b3ad07f944ceb94e3da4097 *INDEX
4bd38813e83d6af4e0f9a87946daa827 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
1c74298d04b973815e0b7038d6a59036 *Meta/hsearch.rds
6c5be60085f85f62cfeb28b7657c0aee *Meta/links.rds
1f52b5474360032c4c7030d5327af7cc *Meta/nsInfo.rds
0cfb39e86121bff689c4df1831b38db5 *Meta/package.rds
f0d22c74a7540df057ed4dbfd78736fc *Meta/vignette.rds
f55d1c142f5dc575a2b86337e14ef1c7 *NAMESPACE
58a9010ea2e867ffdec4c8d0b34070d3 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scater
767d9a3b53c9a399cc2ce09b84305f2f *R/scater.rdb
19d878143ea4d4d2ef7ebfca183c9992 *R/scater.rdx
1d31b399ad36f8964044fb834a28fee7 *doc/index.html
e273b465b5fbf2d16d060f00a7ae295c *doc/overview.R
32e56d5eb4b742f2e0cd98cf07542fda *doc/overview.Rmd
cd33a996f480efbbab515c477fb64fc4 *doc/overview.html
3d40cf0b203a6a530232049e9de1cab4 *help/AnIndex
1be5b33c924114ea235514afe31889f3 *help/Reduced dimension plots.html
5d4699856024e3649d15c39c71aa5927 *help/SCESet-class.html
5d4699856024e3649d15c39c71aa5927 *help/SCESet.html
b9251dc73322b8fe89bedba2daab9915 *help/accessors.html
a33a14c15b585b93294aa6587a38334b *help/addPerCellQC.html
a33a14c15b585b93294aa6587a38334b *help/addPerFeatureQC.html
a33a14c15b585b93294aa6587a38334b *help/aggregateAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/aggregateAcrossFeatures.html
5ffd244d5a4fdb616b4b16d4748c714b *help/aliases.rds
327879d1dde7590c8c2c7d5eff31b504 *help/annotateBMFeatures.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps,SingleCellExperiment-method.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps.html
a33a14c15b585b93294aa6587a38334b *help/calculateAverage.html
a33a14c15b585b93294aa6587a38334b *help/calculateCPM.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap,ANY-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap,SingleCellExperiment-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap,SummarizedExperiment-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap.html
a33a14c15b585b93294aa6587a38334b *help/calculateFPKM.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS,ANY-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS,SingleCellExperiment-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS,SummarizedExperiment-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP,ANY-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP,SingleCellExperiment-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP,SummarizedExperiment-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF,ANY-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF,SingleCellExperiment-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF,SummarizedExperiment-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA,ANY-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA,SingleCellExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA,SummarizedExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA.html
dac9507fbdb50dc974595cda71e1ea15 *help/calculateQCMetrics.html
a33a14c15b585b93294aa6587a38334b *help/calculateTPM.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE,ANY-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE,SingleCellExperiment-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE,SummarizedExperiment-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP,ANY-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP,SingleCellExperiment-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP,SummarizedExperiment-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP.html
dac9507fbdb50dc974595cda71e1ea15 *help/centreSizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/computeLibraryFactors.html
a33a14c15b585b93294aa6587a38334b *help/computeMedianFactors.html
dac9507fbdb50dc974595cda71e1ea15 *help/defunct.html
b9251dc73322b8fe89bedba2daab9915 *help/exprs,SingleCellExperiment-method,.html
b9251dc73322b8fe89bedba2daab9915 *help/exprs.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm,SingleCellExperiment-method.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm.html
327879d1dde7590c8c2c7d5eff31b504 *help/getBMFeatureAnnos.html
1198a51f36fbeaa4d17088e56412290d *help/getExplanatoryPCs.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained,ANY-method.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained,SummarizedExperiment-method.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained.html
86d5444230b32503e5cb04ae62beeca3 *help/ggcells.html
86d5444230b32503e5cb04ae62beeca3 *help/ggfeatures.html
86d5444230b32503e5cb04ae62beeca3 *help/ggsce.html
a33a14c15b585b93294aa6587a38334b *help/isOutlier.html
a33a14c15b585b93294aa6587a38334b *help/librarySizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/logNormCounts.html
a33a14c15b585b93294aa6587a38334b *help/makePerCellDF.html
a33a14c15b585b93294aa6587a38334b *help/makePerFeatureDF.html
a33a14c15b585b93294aa6587a38334b *help/medianSizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/mockSCE.html
a3b6a777d81e8dfea87cd00d6f1cb890 *help/multiplot.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs,ANY-method.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs,SummarizedExperiment-method.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs,SingleCellExperiment-method.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs.html
dac9507fbdb50dc974595cda71e1ea15 *help/normalize,SingleCellExperiment-method.html
a33a14c15b585b93294aa6587a38334b *help/normalizeCounts.html
a33a14c15b585b93294aa6587a38334b *help/numDetectedAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/numDetectedAcrossFeatures.html
d7fac5332fc75966cfe390661d6f328d *help/paths.rds
a33a14c15b585b93294aa6587a38334b *help/perCellQCMetrics.html
a33a14c15b585b93294aa6587a38334b *help/perFeatureQCMetrics.html
ec07c947212a38667ed08d286807c3b7 *help/plotColData.html
1be5b33c924114ea235514afe31889f3 *help/plotDiffusionMap.html
277beb52e5a12d2760b4fb3c545d5a04 *help/plotDots.html
9cec415588d33b7b633462d5b86ece4a *help/plotExplanatoryPCs.html
db331c72707660c13ea673b2f1eb7185 *help/plotExplanatoryVariables.html
1f65d2292e5b3632112d9e2bb8652c72 *help/plotExpression.html
dde1a6499af4094f06b0220dbe1f1483 *help/plotGroupedHeatmap.html
b597e5dbb3c8c2d0d5b4939bec597dff *help/plotHeatmap.html
c3a365e95959b2526f41084e4efcdf21 *help/plotHighestExprs.html
1be5b33c924114ea235514afe31889f3 *help/plotMDS.html
1be5b33c924114ea235514afe31889f3 *help/plotNMF.html
1be5b33c924114ea235514afe31889f3 *help/plotPCA,SingleCellExperiment-method.html
1be5b33c924114ea235514afe31889f3 *help/plotPCA.html
1be5b33c924114ea235514afe31889f3 *help/plotPCASCE.html
43b6f458fbb475f693c79960a362bdeb *help/plotPlatePosition.html
933198f69f0e012211393b06013896c2 *help/plotRLE,SingleCellExperiment-method.html
933198f69f0e012211393b06013896c2 *help/plotRLE.html
0be7d7b514c725e9e91ee5840a5327c0 *help/plotReducedDim.html
2037a50829c7dfc3f1b4de5fcd3de6d4 *help/plotRowData.html
4e4e34c833d1f8ed8eaa6dee6e14f879 *help/plotScater.html
1be5b33c924114ea235514afe31889f3 *help/plotTSNE.html
1be5b33c924114ea235514afe31889f3 *help/plotUMAP.html
1be5b33c924114ea235514afe31889f3 *help/plot_reddim.html
a33a14c15b585b93294aa6587a38334b *help/quickPerCellQC.html
a33a14c15b585b93294aa6587a38334b *help/readSparseCounts.html
a33a14c15b585b93294aa6587a38334b *help/reexports.html
5c5b78ea7b5acb4183a9fe8ce104da22 *help/retrieveCellInfo.html
c499ebdb193344d9bd3d7bbbe1131b10 *help/retrieveFeatureInfo.html
1e79ae9667b5461bdabed67535aa59a4 *help/runColDataPCA.html
036573ca0f25a80c5e93448790587dc5 *help/runDiffusionMap.html
44a5d044690857f84eebf4b7487bedc2 *help/runMDS.html
9b633af12560a5c13daf97b1d8017e3c *help/runMultiUMAP.html
ce994f7051e855fadabe0ceb7ba35217 *help/runNMF.html
3653cf8ddf2af32d0804153bba9eab5d *help/runPCA,SingleCellExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/runPCA.html
4e959dd25d750e0f591f32076d3c5662 *help/runTSNE.html
311721a9d3f49417dd7d425e62a19036 *help/runUMAP.html
56c6a190a856364fa1f21a8195dbfcb7 *help/scater-pkg.html
32f46afe4796a845b66c781c42801962 *help/scater-plot-args.html
8c73f0e13c6be888aed7497c2fc62a1f *help/scater.rdb
c1e35de9cfd1e43c0f012326d174be25 *help/scater.rdx
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs,SingleCellExperiment-method,.html
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs.html
a33a14c15b585b93294aa6587a38334b *help/sumCountsAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/sumCountsAcrossFeatures.html
b498205200236991c316a556e05a7d48 *help/toSingleCellExperiment.html
a33a14c15b585b93294aa6587a38334b *help/uniquifyFeatureNames.html
b498205200236991c316a556e05a7d48 *help/updateSCESet.html
340ded19e04c0477c612385734ce4a84 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
aaf9cf5574b0e2f00f00b0bad601cb0a *html/SCESet.html
304531ca45ff34a85c8ec8bdd0cfd0ed *html/accessors.html
34bc0b993598cef47149fe9efb35f0ad *html/annotateBMFeatures.html
dbb23f22383fbd7c12f587f25703ff2d *html/bootstraps.html
bef94df76f59a230556b20dbfa959d82 *html/defunct.html
96d834be8c6357bab06f339e0a001392 *html/getExplanatoryPCs.html
dee4f1e6b88fb5c33ba5cc8388af4e61 *html/getVarianceExplained.html
aa8b1fb9b8091f671d38c2b11322992d *html/ggsce.html
32ad01246dc9c08a4b7439e44b284eba *html/multiplot.html
9ab9605d864a6bd4238c15a51d1e9af3 *html/nexprs.html
381ba5be23cffa9c299990c6296dc466 *html/plotColData.html
b7a3afc65372bc6d8226f1e55561d11e *html/plotDots.html
01261bd212a33334c809231f1b28afb4 *html/plotExplanatoryPCs.html
1ed264a11b6a6669631084157efab5dd *html/plotExplanatoryVariables.html
9cdc2f14f0068ffa12e192c3929ece56 *html/plotExpression.html
d3fdab6d64894972fd4ea8440b79adc8 *html/plotGroupedHeatmap.html
9f4383cd1c59d9531f27de63be287eec *html/plotHeatmap.html
8892cb99252b6bf625ae1f2b1ca59d0e *html/plotHighestExprs.html
2af86e1a1a74fa64b31bdf5a8cc6fce9 *html/plotPlatePosition.html
aad90ff0111e0fe9db2f22fe8abb04bd *html/plotRLE.html
dd21f17fa233fc8fb45ebc74ad984382 *html/plotReducedDim.html
795707d7f494cfc28798fe905fe61a9e *html/plotRowData.html
60e99a5412c7b150a09aaea6e6d8bd81 *html/plotScater.html
2a41b8dca864adc61236bafd67fcdd81 *html/plot_reddim.html
4093434c747a4197b600331546c633f9 *html/reexports.html
6a5dc3646365b9f26ebca479e524660a *html/retrieveCellInfo.html
de9d1708a3c8d557449cc5c6c84a23d2 *html/retrieveFeatureInfo.html
99395dd8ba175babd23dd4b08d4d39db *html/runColDataPCA.html
8c991775a240ee4fce5e4830000675e1 *html/runDiffusionMap.html
5626eae04bcafb246d45cf1ca18a6ef7 *html/runMDS.html
628a347cc3141dd4b125e09a1ddb409d *html/runMultiUMAP.html
a484f8a427a976810ecba7bb06d4625d *html/runNMF.html
a30b392a95c27f0c12e4e54d32eed7d1 *html/runPCA.html
23357237beab4b28fc592da796587bc2 *html/runTSNE.html
d18dc7411a37142ae98e2d666dffec7c *html/runUMAP.html
6228a4a68756daabaeb4fe45f9dff675 *html/scater-pkg.html
5b0d53513a468f294fcce023a5174ce5 *html/scater-plot-args.html
87fe3c8c3f2ccae2551f97a734e7167e *html/toSingleCellExperiment.html
e2c260c556624ff60831740c04eb04d9 *www/scater_qc_workflow.png
