ae075240be742c0969aad9c94e6a5e31 *CITATION
72ebabe9bfe89b27aab095540d670b91 *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
540d54a28f173720269829a06207112d *Meta/Rd.rds
50f2f74e7e07b436bcebf033eab30561 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
ef8dae0417ab21b3eb23209b9b48a795 *Meta/hsearch.rds
7d5fa8a214c0c2e6d6806b6712d57982 *Meta/links.rds
1b6a65fd3c5b329c6c3e2ebcfe05212e *Meta/nsInfo.rds
f5bed3a16ff63281be6a3b9d614cd212 *Meta/package.rds
ab0ea64d82f3dc95a28fdc3d7da59fe5 *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/rTRM
0873a41484020fcf3bc967a10052aa53 *R/rTRM.rdb
4760de77b5038d1b70fd3cd0a46a3e05 *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
ec23417ecfa7b09ee66b424f6cb1d30e *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
b12ec61b16c2f0f383900724d8eaa517 *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
0867740e951692ac8d7ed88551f64595 *help/aliases.rds
fe35b996144367f5fde3e9d105a8371d *help/annotateFreq.html
f5fd535b2202bdce4eaec1ace2de5709 *help/annotateModule.html
3a2061db2ed4931bd5e1c9359244ddd9 *help/annotateTRM.html
16efc5b2181796ef0be8a5e261976cf7 *help/biogrid_hs.html
e3b34ade321aed44c1d2dd8c4c112068 *help/biogrid_mm.html
73e80ba100af185e5bc1c0bde55e972e *help/findTRM.html
be7bda1d9bb2729827c2901c758c9542 *help/getAnnotations.html
395f18d24d2d7f1c5fd017e0b54a09c2 *help/getBiogridData.html
2476b191b01c3f47d3cc7d6474c48ce5 *help/getConcentricList.html
a2716a7963e197258c81b2a1772a18d8 *help/getLargestComp.html
2d5764048216f02cfe2950cbc5c9ba81 *help/getMaps.html
8d3800be6495e8467c75233d82a62a0e *help/getMatrices.html
18acba3f834c1dc91c0c7fc6ea7b70a8 *help/getMotifsFromEntrezgene.html
1822c193a47487e376c0dc758b337c65 *help/getMotifsFromSymbol.html
c78d249979e8959660aa15a05bb622b3 *help/getOrthologFromMatrix.html
e8e3f92f96812f63b0f2ce8f3353549d *help/getOrthologs.html
3ebc42cf2f601f824cf586b49d16b337 *help/getOrthologsFromBiomart.html
bea14401f09d61b11b32a164d4fc6d95 *help/getSequencesFromGenome.html
c6566ecc4ad14dc20d6ab2519a0b2435 *help/getSimilarityMatrix.html
788794cabab9e4561045c7d72afd1602 *help/getTFclass.html
983245b7f62cf78500e850b748d94baa *help/getTFclassFromEntrezgene.html
70541d6787f9759db778d56adc03f8c9 *help/getTFterms.html
eae9fb3ad36192d35a992f06bc6763e0 *help/initBiomart.html
112c51b19980c40086d9274c1d9c0acd *help/layout.arc.html
5959a5d71a9a1ae4a593cc9306a8d7e3 *help/layout.concentric.html
2476486eb72842cd8166fc4cb23933fe *help/paths.rds
32bc4059b243adf7da7b15d891f2d3bd *help/plotDegree.html
6e15a66022c8f5447d3984670fd469ba *help/plotGraph.html
35a6ddd0219399c103091ccb8bf0eefe *help/plotTRM.html
e7b5d5db78a8aa509516ebe5e93845fd *help/plotTRMlegend.html
fd12a9241a43351f246ce9cd41858e59 *help/processBiogrid.html
ce26b853587513ffefb6ec1c9a994cc1 *help/rTRM-package.html
ce26b853587513ffefb6ec1c9a994cc1 *help/rTRM.html
6ec48dada3bc16cf760156be27582920 *help/rTRM.rdb
e06e2e20ad940cf2e28a2e6eb4b5e080 *help/rTRM.rdx
4b5b58293566b74e1c4299ed9388aee3 *help/removeVertices.html
216bb285bf83f873b94a359c12d2b6a3 *help/writeTRMreport.html
b5d5d6ee6066c5e06c122fac4ddea6c8 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7d053ac856b5e147f4de8003f9384301 *html/annotateFreq.html
1adb162cd9d2117913d06de00a2a48b9 *html/annotateModule.html
2f5a02f17ed9b218035a6046b4704eee *html/annotateTRM.html
12e00cd719aff477e41f9844e2d39642 *html/biogrid_hs.html
3685d4cd7e58b510f8ca0302970c6b65 *html/biogrid_mm.html
e205832454c1e0bc397ab325678bdbce *html/findTRM.html
8d38b7fa2add148d96d60245116d79c0 *html/getAnnotations.html
24d793d37c4da14cec2fa604baf10ebb *html/getBiogridData.html
c1535d3ad1ea59cdbc4b280dabb91eea *html/getConcentricList.html
48d7fb7fe3a2d916e8afa22a3fa69fcc *html/getLargestComp.html
7d7ed34d8c24eed2dd534035fdc44e64 *html/getMaps.html
66b87c1180d62c2d50137cdfb5098fd1 *html/getMatrices.html
9d2b17b8ec239aec740dbc68375cf537 *html/getMotifsFromEntrezgene.html
b0c4788738f5f248744ef3ca5e370649 *html/getMotifsFromSymbol.html
44e484f61e2e6bf3eece2e69a66d9abd *html/getOrthologFromMatrix.html
35a923d7a552d60ba82228c948f38e8b *html/getOrthologs.html
452b5a4f0a400100a9fc3af24c3a4cb3 *html/getOrthologsFromBiomart.html
9a370fab0529e485e6ef628fee02a8a2 *html/getSequencesFromGenome.html
90000ecf513570895c5d4c78b712285d *html/getSimilarityMatrix.html
18a57a726303811b91ec1657d9728597 *html/getTFclass.html
c2e023721487bb36ed4d0db79267a3fc *html/getTFclassFromEntrezgene.html
3f1728cd87e3234bd74e37d2eef0e9c2 *html/getTFterms.html
a880cfdcade33ff12ed32d85cd128803 *html/initBiomart.html
f0b28334e50cde6958f9e1d752ca03c6 *html/layout.arc.html
976af9eecf8d453c29a368118dbb6d58 *html/layout.concentric.html
5b1bcdf0410e0a5807f3e3b2943bc74a *html/plotDegree.html
a6f005a78da8922c7ea2bf80e7064276 *html/plotGraph.html
e6c4607ab5a73d14f2bb7c84dfa11c62 *html/plotTRM.html
14090f934ce36464aa72d45fa5278511 *html/plotTRMlegend.html
133c05f14a7b65dc158d8dd8998925f9 *html/processBiogrid.html
5b1c441416f8746a953962f2c5f31962 *html/rTRM-package.html
2fd8d2477d05c47bba7d045a787116db *html/removeVertices.html
5ac2f7a3cea5f273b34df552b2c1154c *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
