b4a57bd6a8df36bb0b80d9b6838c3fd2 *DESCRIPTION
7b3e919a012537867cb22de6988d8a09 *INDEX
e417ae0573163be6fb60ea00803b886e *Meta/Rd.rds
20a7605d1782e354746b1b52390c1e9c *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
c59a250dd7595b0e5572492439702ce1 *Meta/hsearch.rds
f5f87295744bc1ec3fd41489eccb4487 *Meta/links.rds
bef229f320b7be2f1c5892574d998a5a *Meta/nsInfo.rds
21c977382e2440766ea699d72fbc10ed *Meta/package.rds
91abbf5cf717fc6dbb4e2c532767620a *Meta/vignette.rds
bab149a784dafad5f1168a335a79b633 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/phenoTest
6ca7531ade412ef5f97c5d5c837ad536 *R/phenoTest.rdb
72faf365478b7630e163323d4bd59966 *R/phenoTest.rdx
c7b2dfd6366b065c4e72b88ea5475d02 *data/epheno.RData
59a5e11528516c913b605fe83e56ec03 *data/eset.RData
c43335e891767b4c9ad2ed5908c05477 *data/eset.genelevel.RData
1c072c13a4ad57a5fb6990011d5508b5 *doc/index.html
0011e9d2a08be8b6d46ad3f59b723112 *doc/phenoTest.R
8f271d8d4783cb5f39cae270d83c5ae2 *doc/phenoTest.Rnw
1dfa9032158d33d8d6cab6941e2efef2 *doc/phenoTest.pdf
5f00a03e755e91ecdd9b437c41b1b664 *help/AnIndex
00f619ea9e712060450949a8a9115d9d *help/ClusterPhenoTest.html
f8fe5cc9a92454ff0e3ed50dc66981d9 *help/ExpressionPhenoTest.html
6088301831466a4c36b150e1b2996739 *help/[,epheno,ANY,ANY,ANY-method.html
97fc412a0be290d514a601ba4e85f8cd *help/[,epheno,ANY,ANY-method.html
ad93eb35be52b6405261b261fd4e391e *help/aliases.rds
97fc412a0be290d514a601ba4e85f8cd *help/approach,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/approach.html
724606a420d593be6a683dd510e0e362 *help/barplotSignatures,epheno,GeneSet-method.html
724606a420d593be6a683dd510e0e362 *help/barplotSignatures,epheno,GeneSetCollection-method.html
724606a420d593be6a683dd510e0e362 *help/barplotSignatures,epheno,character-method.html
724606a420d593be6a683dd510e0e362 *help/barplotSignatures,epheno,list-method.html
724606a420d593be6a683dd510e0e362 *help/barplotSignatures-methods.html
758664ecce23b40f0fd87173aa2db4ea *help/barplotSignatures.html
a99306710e6703ea837cc63228347f91 *help/barplotSignifSignatures,epheno,GeneSet-method.html
a99306710e6703ea837cc63228347f91 *help/barplotSignifSignatures,epheno,GeneSetCollection-method.html
a99306710e6703ea837cc63228347f91 *help/barplotSignifSignatures,epheno,character-method.html
a99306710e6703ea837cc63228347f91 *help/barplotSignifSignatures,epheno,list-method.html
a99306710e6703ea837cc63228347f91 *help/barplotSignifSignatures-methods.html
758664ecce23b40f0fd87173aa2db4ea *help/barplotSignifSignatures.html
97fc412a0be290d514a601ba4e85f8cd *help/dim,epheno-method.html
97fc412a0be290d514a601ba4e85f8cd *help/epheno-class.html
04bb79485ca9bf1090e330cf4c67a952 *help/epheno.html
5dd199ed6c2b4bbdff01d9facefff89f *help/epheno2html.html
6088301831466a4c36b150e1b2996739 *help/ephenoGetters.html
7ea5eaea8dfe89cbb2cc1c8680ba1a21 *help/eset.genelevel.html
66b812187bc8dc39de05cda03d96c27e *help/eset.html
f4951e200470e6d5bb95e9adad3b3faa *help/eset2genelevel.html
e73e53baf2cf46b3cd95700a7658dbed *help/export2CSV,epheno-method.html
e73e53baf2cf46b3cd95700a7658dbed *help/export2CSV-methods.html
bb0e3b004ffa212618a4779375387848 *help/export2CSV.html
f8a92c12a391a61eb80171375d0bfc83 *help/findCopyNumber.html
54723fd237722733281a6061e9f71985 *help/genesInArea.html
d5c9cb930460c56f9ef59d25227d7ca0 *help/getEs,gseaData-method.html
bb2c7f8933e5c06beb93caf9e1adc99c *help/getEs,gseaSignaturesSign-method.html
90509b52f8ef48706d078d57dd7b89cf *help/getEs,gseaSignaturesVar-method.html
f0199e25ffbe2fc6fcbd184f3dd2c2c0 *help/getEs.html
1a5315658b250f97acf4cf5c2eba754e *help/getEsPositions.html
d5c9cb930460c56f9ef59d25227d7ca0 *help/getEsSim,gseaData-method.html
bb2c7f8933e5c06beb93caf9e1adc99c *help/getEsSim,gseaSignaturesSign-method.html
90509b52f8ef48706d078d57dd7b89cf *help/getEsSim,gseaSignaturesVar-method.html
f0199e25ffbe2fc6fcbd184f3dd2c2c0 *help/getEsSim.html
97fc412a0be290d514a601ba4e85f8cd *help/getFc,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getFc.html
d5c9cb930460c56f9ef59d25227d7ca0 *help/getFcHr,gseaData-method.html
bb2c7f8933e5c06beb93caf9e1adc99c *help/getFcHr,gseaSignaturesSign-method.html
90509b52f8ef48706d078d57dd7b89cf *help/getFcHr,gseaSignaturesVar-method.html
f0199e25ffbe2fc6fcbd184f3dd2c2c0 *help/getFcHr.html
f0199e25ffbe2fc6fcbd184f3dd2c2c0 *help/getGseaSignatures.html
97fc412a0be290d514a601ba4e85f8cd *help/getHr,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getHr.html
97fc412a0be290d514a601ba4e85f8cd *help/getMeans,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getMeans.html
f0199e25ffbe2fc6fcbd184f3dd2c2c0 *help/getNes.html
97fc412a0be290d514a601ba4e85f8cd *help/getPostProbs,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getPostProbs.html
97fc412a0be290d514a601ba4e85f8cd *help/getPvals,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getPvals.html
97fc412a0be290d514a601ba4e85f8cd *help/getSignif,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getSignif.html
97fc412a0be290d514a601ba4e85f8cd *help/getSummaryDif,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/getSummaryDif.html
da2805e6329999efec668793581f112a *help/getVars2test,epheno-method.html
da2805e6329999efec668793581f112a *help/getVars2test-methods.html
8d6f4d5bdaa8b65d3b44eb4466c373ad *help/getVars2test.html
955192a91fa8dcd63c608ac0aa5d3ed7 *help/gsea.html
79225da1fe8da64cfc21bfc9add369c5 *help/gsea.selGsets.html
79225da1fe8da64cfc21bfc9add369c5 *help/gsea.selVars.html
79225da1fe8da64cfc21bfc9add369c5 *help/gsea.subset.html
52ab2d8075e7619a9bb2a4eadf5c754a *help/gsea2html.html
d5c9cb930460c56f9ef59d25227d7ca0 *help/gseaData-class.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,ANY,GeneSet-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,ANY,character-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,epheno,GeneSetCollection-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,epheno,list-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,matrix,GeneSetCollection-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,matrix,list-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,numeric,GeneSetCollection-method.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures,numeric,list-method.html
6ea98ae6c77710e6ce295ddcf86de938 *help/gseaSignatures-class.html
cd7f340fe1caed372e1d2fd7b4a1fbe9 *help/gseaSignatures-methods.html
ef57ccc46d7f5bba0712f996f9147c78 *help/gseaSignatures.html
bb2c7f8933e5c06beb93caf9e1adc99c *help/gseaSignaturesSign-class.html
90509b52f8ef48706d078d57dd7b89cf *help/gseaSignaturesVar-class.html
bb2c7f8933e5c06beb93caf9e1adc99c *help/gseaSignificance,gseaSignaturesSign-method.html
90509b52f8ef48706d078d57dd7b89cf *help/gseaSignificance,gseaSignaturesVar-method.html
66eb41ffc981f64a681810aa5505c843 *help/gseaSignificance.html
a44af835ad7d772b521ece477db71f5b *help/gseaSignificanceSign-class.html
660d4848fe6ec8b9c841cc03d6bba07e *help/gseaSignificanceVar-class.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest,ExpressionSet,GeneSet-method.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest,ExpressionSet,GeneSetCollection-method.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest,ExpressionSet,character-method.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest,ExpressionSet,list-method.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest,ExpressionSet,missing-method.html
a2e774d078c05b2f564b9173a193f887 *help/heatmapPhenoTest-methods.html
5c15abf236fc393173fb5b1a3379dafd *help/heatmapPhenoTest.html
97fc412a0be290d514a601ba4e85f8cd *help/logFcHr,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/logFcHr.html
97fc412a0be290d514a601ba4e85f8cd *help/p.adjust.method,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/p.adjust.method.html
514e8df0cf2414bf037396cfd58de0c3 *help/pAdjust,epheno-method.html
514e8df0cf2414bf037396cfd58de0c3 *help/pAdjust-methods.html
35d828d7cbd9563aead4abb3b6a45761 *help/pAdjust.html
25e97305a155b7cbf8e9ed12bde2da0f *help/paths.rds
b1d54dfff80d0aab626b3e70171e19e3 *help/pca.html
97fc412a0be290d514a601ba4e85f8cd *help/phenoClass,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/phenoClass.html
97fc412a0be290d514a601ba4e85f8cd *help/phenoNames,epheno-method.html
6088301831466a4c36b150e1b2996739 *help/phenoNames.html
3b15f6760b7fe3a94aeeca4fd05b37a8 *help/phenoTest-package.html
3b15f6760b7fe3a94aeeca4fd05b37a8 *help/phenoTest.html
18c96512835f8e9e3671b6277e50e50b *help/phenoTest.rdb
93dd8ddb6f3f9051bcf2840048250bff *help/phenoTest.rdx
a6b02ea165e64989add7cffa92e79934 *help/plot.gsea.html
a6b02ea165e64989add7cffa92e79934 *help/plot.gseaData.html
5a4a664a175bcccab40449bf1c8319f8 *help/plot.gseaSignatures.html
5a4a664a175bcccab40449bf1c8319f8 *help/plot.gseaSignaturesSign.html
5a4a664a175bcccab40449bf1c8319f8 *help/plot.gseaSignaturesVar.html
758664ecce23b40f0fd87173aa2db4ea *help/plots4epheno.html
2a304d01e83640e386e0e7182e3d094e *help/show,ANY-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,AnnotatedDataFrame-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,LargeDataObject-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,MIAME-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,MethodDefinition-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,MethodSelectionReport-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,MethodWithNext-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,ObjectsWithPackage-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,ScalarCharacter-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,ScalarObject-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,TestResults-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,Versioned-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,Versions-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,VersionsNull-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,classRepresentation-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,container-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,eSet-method.html
97fc412a0be290d514a601ba4e85f8cd *help/show,epheno-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,genericFunction-method.html
d5c9cb930460c56f9ef59d25227d7ca0 *help/show,gseaData-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,gseaSignaturesSign-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,gseaSignaturesVar-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,gseaSignificanceSign-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,gseaSignificanceVar-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,namedList-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,oldClass-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,signature-method.html
2a304d01e83640e386e0e7182e3d094e *help/show,traceable-method.html
2a304d01e83640e386e0e7182e3d094e *help/show-methods.html
23c1177d96da41d81e1b975110d05427 *help/smoothCoxph.html
c9fbedd832b30a7237fd8a5b87b4de9b *help/summary.gsea.html
c9fbedd832b30a7237fd8a5b87b4de9b *help/summary.gseaData.html
a4d6cbf452ce46b4cb16bf4b09a76080 *help/summary.gseaSignificance.html
a4d6cbf452ce46b4cb16bf4b09a76080 *help/summary.gseaSignificanceSign.html
a4d6cbf452ce46b4cb16bf4b09a76080 *help/summary.gseaSignificanceVar.html
d20eb800f2e1d7f96f4c43d066d4f941 *help/write.html.html
7a8d5fc3526d125bfec586ea9f4d4f97 *html/00Index.html
86eb1613e56c36ee26f3e2828a1e3a19 *html/ClusterPhenoTest.html
1155fd023742773645b54f4bad0bb7c6 *html/ExpressionPhenoTest.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0a2d334efc2140fbf757211cceebd7af *html/barplotSignatures-methods.html
2be3b80bf42c8351b56dee61b678ed4c *html/barplotSignifSignatures-methods.html
aeed2b67773c3454da6b65d332b9e803 *html/epheno-class.html
b64b24607235f987a73c8e76aabecb2d *html/epheno.html
4ab3441a9835e792fdf19eed86307c92 *html/epheno2html.html
4dcb918721bc7d1b93bbe67315dc7fac *html/ephenoGetters.html
5ef6676d348386248f21868cf3134ac4 *html/eset.genelevel.html
0b3099c5c8e24479c4d20942fd8db32b *html/eset.html
9516bc6852a3bc4401127f97922b982a *html/eset2genelevel.html
23664329912ac340c71bdd612f8fa228 *html/export2CSV-methods.html
ae59e7b2d8cad6f35d1d5d67d964da1c *html/export2CSV.html
deae0275648caf8ed33da2aa799291ea *html/findCopyNumber.html
c06f4df8c716f279c3859f2461d41bfc *html/genesInArea.html
998876cdabaed46f1744cf0268e67d39 *html/getEsPositions.html
49a70b7e5db209de01bc88106c397163 *html/getGseaSignatures.html
73d4c083ed1d0ab7945f9a37bda5474e *html/getVars2test-methods.html
37773c2735717a5cd2ed48caeee21d1e *html/getVars2test.html
77f32657e792ffe1ceb94cd444657607 *html/gsea.html
a9a8172a5946a9d66511ac5690907706 *html/gsea.subset.html
cbf9d0b8bb3c7c412d5f9b1120b2a155 *html/gsea2html.html
c5c6217a40a75fa78cbb3d82f3284d84 *html/gseaData-class.html
9e35d15eeb7ac93b316a27d08b045e89 *html/gseaSignatures-class.html
1f87ec1ea9590865900edee00e37f122 *html/gseaSignatures-methods.html
66c09cf83b0b8bdca63a2097e3b00f5a *html/gseaSignatures.html
67af733455fc5a9feb7b990789f27b61 *html/gseaSignaturesSign-class.html
711d8580cb5ad413351d70d73b51d52f *html/gseaSignaturesVar-class.html
e43f737dada9b2dec3ef784d272bf32e *html/gseaSignificance.html
f142ad90cd86d5f5f42304fe21440249 *html/gseaSignificanceSign-class.html
21b913aea74552d32f7748a52d50ce06 *html/gseaSignificanceVar-class.html
491d2bb7c0f1d6323273691c27bcdef6 *html/heatmapPhenoTest-methods.html
e96743ccba7c648b5fb262f4369e8ed1 *html/heatmapPhenoTest.html
d9842a71fa60286595dd65b52d249f38 *html/pAdjust-methods.html
e6afa412101a67ea333868a6762c9372 *html/pAdjust.html
7a2ae0218989d8f9c340086cffe55fa1 *html/pca.html
c01f80fc510ca3397f445b83849c1b23 *html/phenoTest-package.html
055cb1f92ebcba166e6501c8d602f0e4 *html/plot.gsea.html
769319da5a30af888f5766df8aa20bc5 *html/plot.gseaSignatures.html
d11646b8242ae76e98b17c0db7cfc351 *html/plots4epheno.html
fbfbac6d0ed2d4336e7518d399f008bf *html/show-methods.html
65d5e87129daf1c9cf56ccbf094b6bc9 *html/smoothCoxph.html
dc39bc6cdad107f7cf5d695d7d5b367c *html/summary.gsea.html
7806a8b167b231ad6b501c0518411ef4 *html/summary.gseaSignificance.html
2eb5cd6f8a4befe9958778cc0ce73921 *html/write.html.html
16144e566b5a59a40c18dc98679bc344 *javascript/dragtable.js
b103eb1265a62f9f6a7ebf7519891ce7 *javascript/sorttable.js
