| plot_contrast_results {mistyR} | R Documentation |
Plot interexperiment contrast of views.
plot_contrast_results( misty.results.from, misty.results.to, views = NULL, cutoff.from = 1, cutoff.to = 1 )
misty.results.from, misty.results.to |
a results list generated by
|
views |
one or more abbreviated names of views. |
cutoff.from, cutoff.to |
importance thresholds respective to the result lists. |
The heatmaps show the interactions that are present and have importance above
a cutoff.to value in the views of misty.results.to but
not present or have importance below cutoff.from in the views
of misty.results.from.
The misty.results.from list (invisibly).
collect_results() to generate a
results list from raw results.
Other plotting functions:
plot_contrast_heatmap(),
plot_improvement_stats(),
plot_interaction_communities(),
plot_interaction_heatmap(),
plot_view_contributions()
# if for example the available samples come from different grades of tumors
grade1.results <- collect_results(c("results/synthetic1", "results/synthetic2"))
grade3.results <- collect_results("results/synthetic10")
# highlight interactions present in grade 1 tumors but not in grade 3 tumors
# in the paraview
grade3.results %>% plot_contrast_results(grade1.results, views = "para.10")
# see the loss of interactions in all views with lower sensitivity
plot_contrast_results(grade3.results, grade1.results, cutoff.from = 0.75, cutoff.to = 0.5)