Coerce a phyloseq object to a TreeSummarizedExperiment

Description

makeTreeSummarizedExperimentFromphyloseq converts phyloseq objects into TreeSummarizedExperiment objects.

Usage

makeTreeSummarizedExperimentFromphyloseq(obj)

Arguments

Details

All data stored in a phyloseq object is transfered.

Value

An object of class TreeSummarizedExperiment

See Also

makeSummarizedExperimentFromBiom makeTreeSummarizedExperimentFromDADA2 loadFromQIIME2 loadFromMothur

Examples

if (requireNamespace("phyloseq")) {
    data(GlobalPatterns, package="phyloseq")
    makeTreeSummarizedExperimentFromphyloseq(GlobalPatterns)
    data(enterotype, package="phyloseq")
    makeTreeSummarizedExperimentFromphyloseq(enterotype)
    data(esophagus, package="phyloseq")
    makeTreeSummarizedExperimentFromphyloseq(esophagus)
}