b4d0858b7a50534150c713036c926e54 *CITATION
f754d26ab8ecf378274504c8850e5902 *DESCRIPTION
d10acc9933903a3beb9527841640a16f *INDEX
1c40852594f8f23eb0bf3a5086efc9c5 *Meta/Rd.rds
670720d2e1c4326f8bf40380467e08d0 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
706e2264cc0d46c59f6b38b182a2b8cc *Meta/hsearch.rds
d2327f59c9181458c56825bb223b158b *Meta/links.rds
2e881766cfd53c06a37a28ec3a76ba2b *Meta/nsInfo.rds
da2a4750147aefc9d1325e1f4ce88702 *Meta/package.rds
252f7c958c4d084ce96dd3b3b410f7cc *Meta/vignette.rds
c57cb37009a2ae19f6fef02250ed3bc0 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/h5vc
22b8a2f0273c29a464eaa7c0d4344265 *R/h5vc.rdb
d746a71aa238760e3c2965438378b0fa *R/h5vc.rdx
c2945e1af51fac5b5c325587ab05a31c *data/bases.rda
09991dd1e000f55b142821da4df6de9f *doc/bioc_adapted.css
6013a5835826bd22900b7124141b601b *doc/h5vc.simple.genome.browser.R
22397e70b40c7a5d1efd37dd698da5fa *doc/h5vc.simple.genome.browser.Rmd
3b8bface1a682dbd0d1caf8ca6990912 *doc/h5vc.simple.genome.browser.html
c8ec695a907833435e1478b9da8f60ce *doc/h5vc.tour.R
936d850c0861bdb179783b4387b37b20 *doc/h5vc.tour.Rmd
51cf9e1408fe78738651e1e452e7a8c5 *doc/h5vc.tour.html
545fdac6d5c2ad6a1de9bd34bd6123ad *doc/index.html
6f20698e2dc24d91e482234834b83225 *help/AnIndex
6074055a1cbab21de2d60c4cf2ff9615 *help/aliases.rds
c031926b6ca698b5305d5b909d1e1cb4 *help/applyTallies.html
ed3040db20d868bb8a97e77400e9b5b9 *help/bases.html
64618dd96baf91f8f3a7388e7a43759e *help/batchTallies.html
64618dd96baf91f8f3a7388e7a43759e *help/batchTallyParam.html
f416a9bed54ecbe8788dbc610a1db387 *help/binGenome.html
26515a219be7fb8ccabffc07ea4042db *help/binnedAFs.html
8c322fba1ed1424796d7b25c7ea37102 *help/binnedCoverage.html
8bf16003b354662d009719f8ba161c60 *help/callDeletionsPaired.html
8bf16003b354662d009719f8ba161c60 *help/callVariants.html
40c5b9e833358745a1d1f32e01f948f6 *help/callVariantsFisher.html
8bf16003b354662d009719f8ba161c60 *help/callVariantsPaired.html
40c5b9e833358745a1d1f32e01f948f6 *help/callVariantsPairedFisher.html
3ac2048675cd1456d676483bc40bd15e *help/callVariantsSingle.html
64618dd96baf91f8f3a7388e7a43759e *help/collectTallies.html
8c322fba1ed1424796d7b25c7ea37102 *help/coverage.html
eb735240f4b8519e58505fa254d99d2f *help/defineBlocks.html
eb735240f4b8519e58505fa254d99d2f *help/encodeDNAString.html
eb735240f4b8519e58505fa254d99d2f *help/formatGenomicPosition.html
31f13761be6aef2f788b892afed6449b *help/geom_h5vc.html
eb735240f4b8519e58505fa254d99d2f *help/getChromSize.html
3dbf144b312b0ed48bfb1fea933ea76c *help/getSampleData.html
40be962a887254b96364e557bf16a34b *help/h5dapply,GRanges-method.html
40be962a887254b96364e557bf16a34b *help/h5dapply,IRanges-method.html
40be962a887254b96364e557bf16a34b *help/h5dapply,numeric-method.html
40be962a887254b96364e557bf16a34b *help/h5dapply.html
21d77dd9fa0d540bd11f9a3b4a6c5e6a *help/h5readBlock.html
328cef2fa9d4c5d5bdb2074cd78df7ac *help/h5vc-package.html
328cef2fa9d4c5d5bdb2074cd78df7ac *help/h5vc.html
d973b27e74f99a016c8a84be80bfbac5 *help/h5vc.rdb
f2a9ad5fbac062c824da33e613f7a559 *help/h5vc.rdx
eb735240f4b8519e58505fa254d99d2f *help/helpers.html
d9f7c114c9a95fa1220ed7def1ed3795 *help/mergeTallies.html
48544c0baf011854b4ba9a1fa6aba1ac *help/mergeTallyFiles.html
522e4b626a512c5ded204be523134235 *help/mismatchPlot.html
ed3040db20d868bb8a97e77400e9b5b9 *help/mutationSpectrum.html
60cb06bf0ef3734eed9c939fa057d455 *help/paths.rds
3d2ee725447a7715b62e1eab42c94f56 *help/plotMutationSpectrum.html
5b1f6095653640608bde443c021f6ef6 *help/prepareForHDF5.html
e33d55ed34a78c05124f6b0d9b612c20 *help/prepareTallyFile.html
64618dd96baf91f8f3a7388e7a43759e *help/rerunBatchTallies.html
e33d55ed34a78c05124f6b0d9b612c20 *help/resizeCohort.html
3dbf144b312b0ed48bfb1fea933ea76c *help/setSampleData.html
72de0af39a9a9919505f5c0252826c03 *help/tallyBAM.html
7ca3b92ddf98412027b1a0a03da82330 *help/tallyRanges.html
7ca3b92ddf98412027b1a0a03da82330 *help/tallyRangesBatch.html
7ca3b92ddf98412027b1a0a03da82330 *help/tallyRangesToFile.html
ed3040db20d868bb8a97e77400e9b5b9 *help/variantCalls.html
8bf16003b354662d009719f8ba161c60 *help/vcConfParams.html
923007dd0d208cf171fbaf2b7a08af7c *help/writeReference.html
e2170875654774c1742dc9e9409c0b9b *help/writeToTallyFile.html
a17e0f261e9f8a445aed8aaf8498d51c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
84516b1723c70b994ca7c66ad403d450 *html/applyTallies.html
75e0d57059fc04dd150279bb7f1fe38a *html/batchTallies.html
2e41cb3ff3dee7b8421f87475fc8c9ee *html/binGenome.html
c57b3c1e1a37c07590670b7f412428de *html/binnedAFs.html
de9e8312115ddc7c3bc50abcec1b48b2 *html/callVariants.html
f90d9f92de6fcedf24ac92b6f415d969 *html/callVariantsFisher.html
dd1aa89bc5eb0eb0c8739b1cd02e6e1d *html/callVariantsSingle.html
a56363ea0cb5744ce4fe26ea3e66d436 *html/coverage.html
0db0d278b4c044f2552e8a117b94b1cb *html/geom_h5vc.html
03b4f93208d0147bb9a9f98a471e2513 *html/getSampleData.html
335d0420a56a52057476ac999e3fd447 *html/h5dapply.html
3a5b6c34e53a7e6e8fe34e6fbfba95c7 *html/h5readBlock.html
253edca6a648bf22b97a314720986543 *html/h5vc-package.html
5611953c321b3bb9aaca601a5a693a4c *html/helpers.html
4e606e6045ca23438f131ab82f4a53e1 *html/mergeTallies.html
a238aa3c3cc803ea901927146fb0728e *html/mergeTallyFiles.html
b73b55d15ea6df2be206e8305bb096a6 *html/mismatchPlot.html
d939b088b4e527c84a7da7f06aa69ec3 *html/mutationSpectrum.html
f65b47b525ca331a6e491264515a6f0c *html/plotMutationSpectrum.html
e295f9c3e34a87d1f77020dd71cb62cd *html/prepareForHDF5.html
2388c2665618add558be008117a46f45 *html/prepareTallyFile.html
79b8cb29b5d82d088b7194ba6750c3ab *html/tallyBAM.html
313a4b8aa9207129e4f948182a703c26 *html/tallyRanges.html
865723a9cd1465ab745a3af0962c04c9 *html/writeReference.html
826223e325b37ec4cd4976fba9d46a92 *html/writeToTallyFile.html
6cf3fa971eeaff39617649ebfbcbfb86 *libs/i386/h5vc.dll
dc83897f425b988e27d5a40304071db7 *libs/x64/h5vc.dll
73ceca9b4a72b1a83d37905ad4d3a529 *unitTests/expected.counts.txt
0a627b8638aee4ce1659079fc42c0946 *unitTests/insert.bam
ef4f5cd7f5833fc619d370bc0f94459e *unitTests/insert.bam.bai
a862e66c570a6d9f7e4d3f00031c5b9d *unitTests/test_tallyBAM.R
