eea4571e2175e7c658d9048ac2f05839 *CITATION
4c3083d26ade5caae326d416c560d49a *DESCRIPTION
f034eb48c17538dbf5b69b774aae4562 *INDEX
f07f150526f2531b34a26f6887dbc568 *Meta/Rd.rds
ad363ba8ab8b86de358c655c8a3cac99 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
a3d0178accfcaa103fb0aa2d90dfb71c *Meta/hsearch.rds
1069136089194ac4bae03972b8d9c7c4 *Meta/links.rds
87737381f2de9b32f022d397bd46d4c2 *Meta/nsInfo.rds
1dba2352a6972a59d90601a8dfd92c0f *Meta/package.rds
9a90732f912b148b1292a5e8fed17115 *Meta/vignette.rds
1b9df3bf4b6399a601b0237584cc736a *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/epigenomix
074802e74341ac52646152692f3c8b7d *R/epigenomix.rdb
898b3432bdf27f07331f0002fce04c23 *R/epigenomix.rdx
471404eb1418ed5bc055799d66f96623 *data/eSet.RData
0de9d9b99afb6e378b19772a1622155e *data/fpkm.RData
44d1e4ce364c2247bb36d871d11ac43e *data/mappedReads.RData
d5442349c7db2eb86eae62a2a963349a *data/transToTSS.RData
b1152289255c91d661af5cc30d99968a *doc/epigenomix.R
0a3aa13ac0a4f7c11f0b423cfb0abbcd *doc/epigenomix.Rnw
9af3bd7a7cbe30cf94f052f8fcedd307 *doc/epigenomix.pdf
339581bf6fd836fc304c980154efc1ce *doc/index.html
b293117766c33a35478fc84ece1f12ab *help/AnIndex
47d2173037f94b1bcccc955693df43e0 *help/ChIPseqSet,matrix,GRanges-method.html
47d2173037f94b1bcccc955693df43e0 *help/ChIPseqSet,matrix,GRangesList-method.html
47d2173037f94b1bcccc955693df43e0 *help/ChIPseqSet-class.html
47d2173037f94b1bcccc955693df43e0 *help/ChIPseqSet.html
cfbcba614e174b94688406777594ebb9 *help/MixModel-class.html
bbf5064c46526e4abfa241dfe69fe343 *help/MixModelBayes-class.html
483c9dba510d8910aae57bd8ca2c27b9 *help/MixModelML-class.html
fce37e6fac67d5eee58c1bf1afce4a3f *help/MixtureComponent-class.html
bbf5064c46526e4abfa241dfe69fe343 *help/acceptanceRate,MixModelBayes-method.html
bbf5064c46526e4abfa241dfe69fe343 *help/acceptanceRate.html
0105032686b70d8bdaa102cdd78a5ac2 *help/aliases.rds
cfbcba614e174b94688406777594ebb9 *help/as.data.frame,MixModel-method.html
57cf064db08ceffece3389ef2fbb7182 *help/bayesMixModel,numeric-method.html
57cf064db08ceffece3389ef2fbb7182 *help/bayesMixModel.html
e02cb5c9e095120184b8409d3d1096a4 *help/calculateCrossCorrelation,GRanges-method.html
e02cb5c9e095120184b8409d3d1096a4 *help/calculateCrossCorrelation.html
bbf5064c46526e4abfa241dfe69fe343 *help/chains,MixModelBayes-method.html
bbf5064c46526e4abfa241dfe69fe343 *help/chains.html
47d2173037f94b1bcccc955693df43e0 *help/chipVals,ChIPseqSet-method.html
47d2173037f94b1bcccc955693df43e0 *help/chipVals.html
cfbcba614e174b94688406777594ebb9 *help/classification,MixModel,character-method.html
cfbcba614e174b94688406777594ebb9 *help/classification,MixModel,missing-method.html
cfbcba614e174b94688406777594ebb9 *help/classification.html
cfbcba614e174b94688406777594ebb9 *help/components,MixModel-method.html
cfbcba614e174b94688406777594ebb9 *help/components.html
483c9dba510d8910aae57bd8ca2c27b9 *help/convergence,MixModelML-method.html
483c9dba510d8910aae57bd8ca2c27b9 *help/convergence.html
47d2173037f94b1bcccc955693df43e0 *help/cpm,ChIPseqSet-method.html
47d2173037f94b1bcccc955693df43e0 *help/cpm.html
cfbcba614e174b94688406777594ebb9 *help/dim,MixModel-method.html
6ab7ffc02ac81347ba92e4ddf151a4ea *help/eSet.html
df6f5cd81a34b2ad646eb567290b5595 *help/epigenomix.rdb
e452f04ddad24aa0ac9df9b8b8cf21a3 *help/epigenomix.rdx
e509c2323b45cb7852405451924c38f7 *help/fpkm.html
a7cfbd88527173237af524f6ac6832f4 *help/getAlignmentQuality,character-method.html
a7cfbd88527173237af524f6ac6832f4 *help/getAlignmentQuality.html
8511f0272208383455cfce7eec22fe19 *help/integrateData,ExpressionSet,ChIPseqSet,character,character-method.html
8511f0272208383455cfce7eec22fe19 *help/integrateData,ExpressionSet,ChIPseqSet,character,missing-method.html
8511f0272208383455cfce7eec22fe19 *help/integrateData,ExpressionSetIllumina,ChIPseqSet,character,character-method.html
8511f0272208383455cfce7eec22fe19 *help/integrateData,ExpressionSetIllumina,ChIPseqSet,character,missing-method.html
8511f0272208383455cfce7eec22fe19 *help/integrateData.html
cfbcba614e174b94688406777594ebb9 *help/length,MixModel-method.html
cfbcba614e174b94688406777594ebb9 *help/listClassificationMethods,MixModel-method.html
cfbcba614e174b94688406777594ebb9 *help/listClassificationMethods.html
f0cb0b484c41f368a7c052a753e3eb08 *help/mappedReads.html
4a2d863fb7215df25631e17bc7557a95 *help/matchProbeToPromoter,list,data.frame-method.html
4a2d863fb7215df25631e17bc7557a95 *help/matchProbeToPromoter.html
0c30511c5bb036fefc913ce69e83c3d3 *help/mlMixModel,numeric-method.html
0c30511c5bb036fefc913ce69e83c3d3 *help/mlMixModel.html
cfbcba614e174b94688406777594ebb9 *help/mmData,MixModel-method.html
cfbcba614e174b94688406777594ebb9 *help/mmData.html
59401a3c3efd68948965630907cacdae *help/normalize,ChIPseqSet-method.html
59401a3c3efd68948965630907cacdae *help/normalize,ExpressionSet-method.html
59401a3c3efd68948965630907cacdae *help/normalize.html
b9541dcc56678f870b2728587f00db70 *help/normalizeChIP,ChIPseqSet,character-method.html
b9541dcc56678f870b2728587f00db70 *help/normalizeChIP.html
0ad76eace69b83944aaab444bbd4ddf4 *help/paths.rds
04aa3c6244fdf62f9063e33a6413a5ab *help/plotChains,MixModelBayes-method.html
04aa3c6244fdf62f9063e33a6413a5ab *help/plotChains.html
a1934e9685bb54a70cce994a774a8c35 *help/plotClassification,MixModel-method.html
a1934e9685bb54a70cce994a774a8c35 *help/plotClassification.html
9bd722f837d3abe4b5a8de4022e1d347 *help/plotComponents,MixModel-method.html
9bd722f837d3abe4b5a8de4022e1d347 *help/plotComponents.html
cfbcba614e174b94688406777594ebb9 *help/show,MixModel-method.html
fce37e6fac67d5eee58c1bf1afce4a3f *help/show,MixtureComponent-method.html
8fb480237a133c4ba4c916d37106ee59 *help/summarizeReads,GRangesList,GRanges,character-method.html
8fb480237a133c4ba4c916d37106ee59 *help/summarizeReads,GRangesList,GRanges,missing-method.html
8fb480237a133c4ba4c916d37106ee59 *help/summarizeReads,GRangesList,GRangesList,character-method.html
8fb480237a133c4ba4c916d37106ee59 *help/summarizeReads,GRangesList,GRangesList,missing-method.html
8fb480237a133c4ba4c916d37106ee59 *help/summarizeReads.html
cfbcba614e174b94688406777594ebb9 *help/summary,MixModel-method.html
cfbcba614e174b94688406777594ebb9 *help/summary,MixModelBayes-method.html
3c386221bb5341ef6b4b493b768c83d2 *help/transToTSS.html
cfbcba614e174b94688406777594ebb9 *help/weights,MixModel-method.html
54d9a6ddea366a153adeb5d3fc3dc025 *html/00Index.html
899867444d6983e5b0f50e30dcd32075 *html/ChIPseqSet-class.html
0d7463df76004d1edff9cc3cdcc73eb0 *html/MixModel-class.html
e12213cce854aad731624b875981b465 *html/MixModelBayes-class.html
9822ba7177232651ebb0468bbb951c1a *html/MixModelML-class.html
0cc3386dea8b1d0d65d7efa70b85ac64 *html/MixtureComponent-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
210a45b9fc2695d920c179861ebee206 *html/bayesMixModel.html
0ab8c6b3407b1d5387fd434f64948d0a *html/calculateCrossCorrelation.html
180984b1a521fdd6f08d9b801303d4fc *html/eSet.html
a820aa137e018efb02e5eedfa5ee5ce1 *html/fpkm.html
7de730c2a6c78da0cf2212a221ef25f5 *html/getAlignmentQuality.html
1a14ffb34696b4732ddb872e07573226 *html/integrateData.html
4e9406267a4f0bd7e6153e5921fd027a *html/mappedReads.html
b7e7a38cbd84720d7a66dd6b23862017 *html/matchProbeToPromoter.html
2b09e65c62a2eaa79f697fd1c1e6b052 *html/mlMixModel.html
f069fd5e6884ec012be85ae27581bc61 *html/normalize.html
90810f3cfb7b35ee96d009394060634c *html/normalizeChIP.html
acfd716aac0ba931e9f5d0cb26aa0a55 *html/plotChains.html
e5cfb7f2891ae57cc7438ed7985941f5 *html/plotClassification.html
b04080117fa495b65b0cf08d10fdf9a3 *html/plotComponents.html
ab08953a4da047a2d27ec9fdcfc3f170 *html/summarizeReads.html
d31b5f96f1547aa5bde7676b3feadb5e *html/transToTSS.html
