R: cmpIdMapping

cmpIdMapping {drugTargetInteractions}

R Documentation

cmpIdMapping

Description

Function to generate compound ID mappings UniChem.

This function requires the ID mapping files "src1src2.txt.gz", "src1src22.txt.gz", and "src1src7.txt.gz" to exist in a directory called "downloads" before being run. These can be generated with the downloadUniChem function.

It will do some processing on these files and output an RDS file at outfile. This file can then be used in other functions, such as drugTargetAnnot.

Usage

cmpIdMapping(outfile=file.path(config$resultsPath,"cmp_ids.rds"), rerun=TRUE,config=genConfig())

Arguments

`outfile`	Path to output file.
`rerun`	If true, runs processing, otherwise does nothing.
`config`	General configuration. See `genConfig`.

Value

Generates an RDS file at outfile.

Author(s)

Thomas Girke

Examples

	 
	 cmpIdMapping("cmp_ids.rds",rerun=FALSE)

[Package drugTargetInteractions version 1.0.0 Index]