1cee4276e542e02bdb36a34d02e52c6c *CITATION
a09059e5f3570aede5ce4e87ab6ed49e *DESCRIPTION
53701ca2fb57113bdd7e6308fe09b1fd *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
46cc8a9abfea24bda14151c638075fa6 *Meta/Rd.rds
79af6472bd82146d5d940e23b9fda9b1 *Meta/data.rds
72f83c9930a200aa05a70eb8864d65c1 *Meta/demo.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
8a10c3de26764bef4c28a216768cdd71 *Meta/hsearch.rds
5566e2eedf227c080e654dbee0d9cb91 *Meta/links.rds
126f9554d6e4ff1497511ceb992e0105 *Meta/nsInfo.rds
187dbf86fe212ff9ecb43251bd3313dd *Meta/package.rds
06feb5f5a083dacdf285d0e14627a49d *Meta/vignette.rds
102d2646e6e6954c9762e0df9e48f66f *NAMESPACE
938659c12f2a9e20fb9767eea1d2ffd9 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/destiny
f19cc4ce354358cec987d5e52fc5bb90 *R/destiny.rdb
4bf785bc566be3a40b94006e8c2d7573 *R/destiny.rdx
6213a088601593074e590e08bf2b491e *data/guo.rda
afea9f5d918a3bc314735e84114352a4 *data/guo_norm.rda
b57f58178083657b17641b058a65410a *demo/destiny.r
52621cb17022abf3599d89ae4709798f *doc/DPT.ipynb
a8a3cce00a79998880b77d73d2b174f2 *doc/DPT.ipynbmeta
d78a87ab63c4c3dc1b4a278961205aae *doc/DPT.pdf
f61aebe680b4a63ebba1e3f0cdd3fbfc *doc/DPT.r
e20baf762bdcefdcfb6743f574c3395c *doc/Diffusion-Map-recap.ipynb
afe775aece8a36d11f08ecfad940d0de *doc/Diffusion-Map-recap.ipynbmeta
e58e524028171500c3a3308fc49aa39a *doc/Diffusion-Map-recap.pdf
8bdd0cc054c37c90d768234f5ec1b818 *doc/Diffusion-Map-recap.r
ca679a81380eef190903b98c334b5af9 *doc/Diffusion-Maps.ipynb
b0e1deb0b897485dfa2e47ccbbdfe34f *doc/Diffusion-Maps.ipynbmeta
ec64f64aa5d0c5f336f4da0849f648aa *doc/Diffusion-Maps.pdf
4ab8e18478a67381ab4b74acc618297f *doc/Diffusion-Maps.r
b86138e1ed77abf07cb066f3c1a871fd *doc/Gene-Relevance.ipynb
18016ec1883f4ccdec495e586db35bf4 *doc/Gene-Relevance.ipynbmeta
c7290b630014a7e1af33cdcf488e4292 *doc/Gene-Relevance.pdf
86ded42c11ef19e25498335682e092c3 *doc/Gene-Relevance.r
580df90965d89740afdec9cd32b9b7c8 *doc/Global-Sigma.ipynb
213b15f8d6125d8efb4ec4ff42802745 *doc/Global-Sigma.ipynbmeta
27c9169c401a4d430987523b55770c91 *doc/Global-Sigma.pdf
e5e3dd2e2c3da7dc04e513c34e4ac2a3 *doc/Global-Sigma.r
f9da4abe503870a36ab4986b1b0ed838 *doc/bibliography.bib
5fad94c2459985f4d4c7d01243182545 *doc/destiny-base.tplx
7860f6b91e21b34533b77b78df471722 *doc/destiny-bib.tplx
d34890cfa0f054bed60b41762f29930b *doc/destiny.tplx
919b65b91501cdd35b492f0bbc021e50 *doc/destiny_processors.py
a6820567f5acbe3eeba5d6da3fe84bb3 *doc/index.html
82023d8410ab1879a333210ace66d1e3 *doc/tidyverse.ipynb
8cf8d403bd13f2dec56ee67aac8a1712 *doc/tidyverse.ipynbmeta
211ce5937644549d569ecdacfa73dcfa *doc/tidyverse.pdf
a40f5901b5a63ce5be6d7545cb587dbd *doc/tidyverse.r
ca4bc55b1004d94774fb7b248660807e *help/$,DPT-method.html
ca4bc55b1004d94774fb7b248660807e *help/$,DiffusionMap-method.html
ca4bc55b1004d94774fb7b248660807e *help/$.DPT.html
ca4bc55b1004d94774fb7b248660807e *help/$.DiffusionMap.html
ce612c9a54066b73d69b1efa8a7ad627 *help/AnIndex
5e1e76a54871a41924ee6384045db3d0 *help/Coercion methods.html
3b10221075d484e97b71f15a92af67e6 *help/DPT matrix methods.html
72bef1c606eafafcc948c3a558188037 *help/DPT methods.html
57f9ff0445075e50bb336d4186e790b1 *help/DPT-class.html
3b10221075d484e97b71f15a92af67e6 *help/DPT-matrix-methods.html
72bef1c606eafafcc948c3a558188037 *help/DPT-methods.html
57f9ff0445075e50bb336d4186e790b1 *help/DPT.html
34546b4128cb8f941ff94dfe572f0b5e *help/DiffusionMap accession methods.html
ebb789f95ce5355ce31c5a60442c2b66 *help/DiffusionMap methods.html
34546b4128cb8f941ff94dfe572f0b5e *help/DiffusionMap-accessors.html
a4ee2f51f9cd0ae0df808bb92e2df29a *help/DiffusionMap-class.html
ebb789f95ce5355ce31c5a60442c2b66 *help/DiffusionMap-methods.html
a4ee2f51f9cd0ae0df808bb92e2df29a *help/DiffusionMap.html
350c79b4786db611b6ef017f17adfdf4 *help/DiffusionMapCompat.html
8364b5e5da3d2a121c5e0077a7608b52 *help/ExpressionSet helper methods.html
8364b5e5da3d2a121c5e0077a7608b52 *help/ExpressionSet-helpers.html
ca4bc55b1004d94774fb7b248660807e *help/Extraction methods.html
7e9beb393aa90d7bef2a221251e56637 *help/Gene Relevance methods.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/Gene Relevance plotting.html
7e9beb393aa90d7bef2a221251e56637 *help/Gene-Relevance-methods.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/Gene-Relevance-plotting.html
2937c852b0205125ec6b58bedcd836b4 *help/Gene-Relevance.html
2937c852b0205125ec6b58bedcd836b4 *help/GeneRelevance-class.html
51ea8db47e23f8d120bf25286d1e4ccb *help/Sigmas-class.html
51ea8db47e23f8d120bf25286d1e4ccb *help/Sigmas-methods.html
d2652e61942b3659cb4833cfb3d42bde *help/Sigmas.html
3b10221075d484e97b71f15a92af67e6 *help/[,DPT,index,index,logicalOrMissing-method.html
3b10221075d484e97b71f15a92af67e6 *help/[,DPT,index,missing,logicalOrMissing-method.html
3b10221075d484e97b71f15a92af67e6 *help/[,DPT,missing,index,logicalOrMissing-method.html
3b10221075d484e97b71f15a92af67e6 *help/[,DPT,missing,missing,logicalOrMissing-method.html
3b10221075d484e97b71f15a92af67e6 *help/[.DPT.html
ca4bc55b1004d94774fb7b248660807e *help/[[,DPT,character,missing-method.html
3b10221075d484e97b71f15a92af67e6 *help/[[,DPT,index,index-method.html
ca4bc55b1004d94774fb7b248660807e *help/[[,DiffusionMap,character,missing-method.html
ca4bc55b1004d94774fb7b248660807e *help/[[.DPT.html
ca4bc55b1004d94774fb7b248660807e *help/[[.DiffusionMap.html
823e2a262abf3da85de7e7411424444f *help/aliases.rds
8364b5e5da3d2a121c5e0077a7608b52 *help/as.ExpressionSet,data.frame-method.html
8364b5e5da3d2a121c5e0077a7608b52 *help/as.ExpressionSet.html
5e1e76a54871a41924ee6384045db3d0 *help/as.data.frame,DPT-method.html
5e1e76a54871a41924ee6384045db3d0 *help/as.data.frame,DiffusionMap-method.html
5e1e76a54871a41924ee6384045db3d0 *help/as.data.frame.DPT.html
5e1e76a54871a41924ee6384045db3d0 *help/as.data.frame.DiffusionMap.html
5e1e76a54871a41924ee6384045db3d0 *help/as.matrix,DPT-method.html
5e1e76a54871a41924ee6384045db3d0 *help/as.matrix.DPT.html
72bef1c606eafafcc948c3a558188037 *help/branch_divide.html
5e1e76a54871a41924ee6384045db3d0 *help/coercions.html
d1471f1a3d33af6347e0d7e0c6228a76 *help/colorlegend.html
350c79b4786db611b6ef017f17adfdf4 *help/cube.helix.html
cfb5ac879f657f126843662138d17232 *help/cube_helix.html
d41d8cd98f00b204e9800998ecf8427e *help/data
72bef1c606eafafcc948c3a558188037 *help/dataset,DPT-method.html
34546b4128cb8f941ff94dfe572f0b5e *help/dataset,DiffusionMap-method.html
7e9beb393aa90d7bef2a221251e56637 *help/dataset,GeneRelevance-method.html
72bef1c606eafafcc948c3a558188037 *help/dataset.DPT.html
7e9beb393aa90d7bef2a221251e56637 *help/dataset.GeneRelevance.html
d2652e61942b3659cb4833cfb3d42bde *help/dataset.html
d2652e61942b3659cb4833cfb3d42bde *help/destiny generics.html
350c79b4786db611b6ef017f17adfdf4 *help/destiny-deprecated.html
d2652e61942b3659cb4833cfb3d42bde *help/destiny-generics.html
3bff8434cc070482638dcb01ed896152 *help/destiny.html
e8f974a1c3f2901532f9703ca54473da *help/destiny.rdb
815413d64b7aa5a823f6c02daee50464 *help/destiny.rdx
3b10221075d484e97b71f15a92af67e6 *help/dim,DPT-method.html
3b10221075d484e97b71f15a92af67e6 *help/dim.DPT.html
34546b4128cb8f941ff94dfe572f0b5e *help/distance,DiffusionMap-method.html
7e9beb393aa90d7bef2a221251e56637 *help/distance,GeneRelevance-method.html
d2652e61942b3659cb4833cfb3d42bde *help/distance.html
350c79b4786db611b6ef017f17adfdf4 *help/dm.predict.html
7a49198ac67d52c89aafd642b0341506 *help/dm_predict.html
350c79b4786db611b6ef017f17adfdf4 *help/eig.decomp.html
5fb6e8e2cdc36346665e3043f79c5952 *help/eig_decomp.html
34546b4128cb8f941ff94dfe572f0b5e *help/eigenvalues,DiffusionMap-method.html
d2652e61942b3659cb4833cfb3d42bde *help/eigenvalues.html
34546b4128cb8f941ff94dfe572f0b5e *help/eigenvectors,DiffusionMap-method.html
d2652e61942b3659cb4833cfb3d42bde *help/eigenvectors.html
ca4bc55b1004d94774fb7b248660807e *help/extractions.html
7e9beb393aa90d7bef2a221251e56637 *help/featureNames,GeneRelevance-method.html
7e9beb393aa90d7bef2a221251e56637 *help/featureNames.GeneRelevance.html
350c79b4786db611b6ef017f17adfdf4 *help/find.dm.k.html
350c79b4786db611b6ef017f17adfdf4 *help/find.sigmas.html
3c432043f1460f52783a72ba65f7c234 *help/find_dm_k.html
05b25e954f481747139b831f2c3f99f0 *help/find_knn.html
2dbfbfb0a7dcafee2a074403d8c88d56 *help/find_sigmas.html
545463f6de33e827319871714b8a3108 *help/find_tips.html
5e1e76a54871a41924ee6384045db3d0 *help/fortify.DPT.html
5e1e76a54871a41924ee6384045db3d0 *help/fortify.DiffusionMap.html
2937c852b0205125ec6b58bedcd836b4 *help/gene_relevance,DiffusionMap,missing-method.html
2937c852b0205125ec6b58bedcd836b4 *help/gene_relevance,matrix,dMatrixOrMatrix-method.html
2937c852b0205125ec6b58bedcd836b4 *help/gene_relevance.html
70df8fab8248fd73014a661bdc38a908 *help/guo.html
70df8fab8248fd73014a661bdc38a908 *help/guo_norm.html
05b25e954f481747139b831f2c3f99f0 *help/knn.html
350c79b4786db611b6ef017f17adfdf4 *help/lWhich.html
8446a90c408edebc7bc518de331079b3 *help/l_which.html
ca4bc55b1004d94774fb7b248660807e *help/names,DPT-method.html
ca4bc55b1004d94774fb7b248660807e *help/names,DiffusionMap-method.html
ca4bc55b1004d94774fb7b248660807e *help/names.DPT.html
ca4bc55b1004d94774fb7b248660807e *help/names.DiffusionMap.html
3b10221075d484e97b71f15a92af67e6 *help/ncol,DPT-method.html
3b10221075d484e97b71f15a92af67e6 *help/ncol.DPT.html
3b10221075d484e97b71f15a92af67e6 *help/nrow,DPT-method.html
3b10221075d484e97b71f15a92af67e6 *help/nrow.DPT.html
350c79b4786db611b6ef017f17adfdf4 *help/optimal.sigma.html
34546b4128cb8f941ff94dfe572f0b5e *help/optimal_sigma,DiffusionMap-method.html
51ea8db47e23f8d120bf25286d1e4ccb *help/optimal_sigma,Sigmas-method.html
d2652e61942b3659cb4833cfb3d42bde *help/optimal_sigma.html
94f4268592ec643149e4005df56b624f *help/paths.rds
1087691d30321053d1ffec0f76b62364 *help/plot,DPT,missing-method.html
1087691d30321053d1ffec0f76b62364 *help/plot,DPT,numeric-method.html
87bce53fef270052ec022bc52cb17fc8 *help/plot,DiffusionMap,missing-method.html
87bce53fef270052ec022bc52cb17fc8 *help/plot,DiffusionMap,numeric-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot,GeneRelevance,character-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot,GeneRelevance,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot,GeneRelevance,numeric-method.html
9743f4e05218e32d3da80bb764731793 *help/plot,Sigmas,missing-method.html
1087691d30321053d1ffec0f76b62364 *help/plot.DPT.html
87bce53fef270052ec022bc52cb17fc8 *help/plot.DiffusionMap.html
9743f4e05218e32d3da80bb764731793 *help/plot.Sigmas.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_differential_map,DiffusionMap,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_differential_map,GeneRelevance,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_differential_map,matrix,matrix-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_differential_map.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance,DiffusionMap,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance,GeneRelevance,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance,matrix,matrix-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance_rank,DiffusionMap,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance_rank,GeneRelevance,missing-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance_rank,matrix,matrix-method.html
7b46a6c43b0d93bc0b8bad3e8ae044ff *help/plot_gene_relevance_rank.html
350c79b4786db611b6ef017f17adfdf4 *help/plot_gradient_map.html
ebb789f95ce5355ce31c5a60442c2b66 *help/print,DiffusionMap-method.html
7e9beb393aa90d7bef2a221251e56637 *help/print,GeneRelevance-method.html
51ea8db47e23f8d120bf25286d1e4ccb *help/print,Sigmas-method.html
ebb789f95ce5355ce31c5a60442c2b66 *help/print.DiffusionMap.html
f85898f57d9ccaacd0ad419393ffe4d0 *help/projection_dist.html
176929bd68a29f3c57ba1f3a7ff9f0f2 *help/random_root.html
8364b5e5da3d2a121c5e0077a7608b52 *help/read.ExpressionSet.html
cfb5ac879f657f126843662138d17232 *help/scale_color_cube_helix.html
cfb5ac879f657f126843662138d17232 *help/scale_colour_cube_helix.html
cfb5ac879f657f126843662138d17232 *help/scale_fill_cube_helix.html
ebb789f95ce5355ce31c5a60442c2b66 *help/show,DiffusionMap-method.html
7e9beb393aa90d7bef2a221251e56637 *help/show,GeneRelevance-method.html
51ea8db47e23f8d120bf25286d1e4ccb *help/show,Sigmas-method.html
ebb789f95ce5355ce31c5a60442c2b66 *help/show.DiffusionMap.html
34546b4128cb8f941ff94dfe572f0b5e *help/sigmas,DiffusionMap-method.html
72bef1c606eafafcc948c3a558188037 *help/tips.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject methods.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject,DiffusionMap-method.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject,GeneRelevance-method.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject,Sigmas-method.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject-methods.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject.DiffusionMap.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject.GeneRelevance.html
e3d076354c5e69bc6428d3d02640cabe *help/updateObject.Sigmas.html
cd46d95a705256d9c726d90a9f0aa340 *html/00Index.html
cc2a986d23abfc3d0615a9f764b17bc2 *html/DPT-matrix-methods.html
41a8be3014113db56dd89b525bb6af86 *html/DPT-methods.html
9777d35aa43923334ed2616b46d5a5d4 *html/DPT.html
3eb74ce2311edb4c91765ba09dc50dd5 *html/DiffusionMap-accessors.html
ed104f189a405d2e64146421c4214a77 *html/DiffusionMap-class.html
07da8daad46cebf4895a4884c243b82a *html/DiffusionMap-methods.html
c909625d68aaff27aa6b56ce18f53d28 *html/ExpressionSet-helpers.html
5cff7554d7a5bdf33eafcf3ce01bb71b *html/Gene-Relevance-methods.html
f62404b879a2d6a086cd2160c1e2c493 *html/Gene-Relevance-plotting.html
3bac68fe16d6baccaa8fe688dba22b46 *html/Gene-Relevance.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4abb07f664e4461f97022ae63927d6a9 *html/Sigmas-class.html
8935463d0b59a88ce507b9fe48e18523 *html/coercions.html
3dec76da87a813ed0954e9934d0bf37f *html/colorlegend.html
5d55de6551557cfab8b12b6467606def *html/cube_helix.html
43bbcaaf579b28917bdf1bbfd9e0b361 *html/destiny-deprecated.html
20d1d99e0fa912c00b907f77f9c9c9bd *html/destiny-generics.html
5eb8a4c21ca861a17041c7ea987acfe0 *html/destiny.html
085fcc00ae659261b9941638ec2d64f8 *html/dm_predict.html
0df6e2b76292e81cadbff407497dbebf *html/eig_decomp.html
0d9c70f77d5d667b2d2df446c461bff3 *html/extractions.html
37acaa589c0829af2169158772623fee *html/find_dm_k.html
5a47ea12aa3a5b4a920051bb382394cd *html/find_sigmas.html
8860055a4a1ccb3b6d62dec7d8995996 *html/find_tips.html
e57d783a74345ddd0de44cfc61db37fb *html/guo.html
dbc4b989ee09dca93cf7b02363e0d393 *html/knn.html
5b99ae2faff9fc438a8a7f4391289360 *html/l_which.html
12a15c4849e02788a20d3629a1dae9ef *html/plot.DPT.html
3c3a50c21b6d3c75d95bef24a2e455dc *html/plot.DiffusionMap.html
e323724e982c23c009435a893d9ea3bd *html/plot.Sigmas.html
7512e31a0ecd719b6fb7960198dfe246 *html/projection_dist.html
c50e991eed40002f80beef0fa435e92c *html/random_root.html
9f974d17c5788ea475eb05db0c9ac960 *html/updateObject-methods.html
4ff37651f217fcacb30778d4e2aff6aa *libs/i386/destiny.dll
8d6103193bf12096b25f47b2ce8c8f8a *libs/x64/destiny.dll
