0696bffef5f6fd05bac8d3ca8a48cbf7 *CITATION
f326e7874618df9f49dee2ce3e2a7505 *DESCRIPTION
543ba715465b3a3834293587ecb6434b *INDEX
b2a4dffdbe68de3c2814c9d1fcfffcd7 *Meta/Rd.rds
324b3deae462f329910f1a7ecc8e52e6 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
96e314fd312d41a618904d1edfeb2c98 *Meta/hsearch.rds
a1eaffd8f2278be2d8cab2e06e3de8fe *Meta/links.rds
a10d365938bd80f04f84d6c70909bb9d *Meta/nsInfo.rds
d5b101772e7ba19662328f2b79ea8d5a *Meta/package.rds
608093f20e723d60cc9b984b875fb4e2 *Meta/vignette.rds
ac378ee60190723f30c46ac39ff0d0ad *NAMESPACE
a9d4bce49e651f0e9b96b7517cbd2476 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/derfinder
4dfb395b49c35768039d172c185b5c03 *R/derfinder.rdb
7b7a17b70e5601464d46d7e0d0bca9e8 *R/derfinder.rdx
6808ad1c1b891106090a6e4f030baed9 *data/Rdata.rdb
715b2608893454493c7723cf99686224 *data/Rdata.rds
eccb3e2be462a95be40b5b2d24dbb9b1 *data/Rdata.rdx
23451a11b6b5e5297989bddfa157b237 *doc/derfinder-quickstart.R
727d046cb1fb985a2bb8605143a46e89 *doc/derfinder-quickstart.Rmd
5c057bded40585357fccea24fe6d00d6 *doc/derfinder-quickstart.html
ab4136d08386f4e58afec6dc4d343e01 *doc/derfinder-users-guide.R
be315be58c4b5c1c7229ebf9dc8f34f6 *doc/derfinder-users-guide.Rmd
93561dba40fb58bcd6ed017ca7c4d717 *doc/derfinder-users-guide.html
8e63b586bee13b7f121023639c1479c8 *doc/index.html
1707e5f61ecdb6bef5c255393642d137 *extdata/chr21/annotation.Rdata
5861be85bec22077e9b60b8993be3214 *extdata/chr21/coveragePrep.Rdata
e28f17afe7db854beebeb57fc44048eb *extdata/chr21/fstats.Rdata
811d5504544e52c38d5bf74d119a01fb *extdata/chr21/optionsStats.Rdata
208486fcb1deea894fb7d694fd154cc5 *extdata/chr21/regions.Rdata
816862090af75d8efbea55e51a8801d5 *extdata/chr21/timeinfo.Rdata
0426ea28eb9a75a992e09f280a4ac681 *extdata/genomeData/ERR009101_accepted_hits.bam
1f80ba92230fbaac1d0681402b8110fc *extdata/genomeData/ERR009101_accepted_hits.bam.bai
c142622650e781b367849f462cdcf637 *extdata/genomeData/ERR009102_accepted_hits.bam
ead5db258229e30d2108deac130d4ad9 *extdata/genomeData/ERR009102_accepted_hits.bam.bai
be874bb027ac94d509408cfd44d982d9 *extdata/genomeData/ERR009105_accepted_hits.bam
be987627a7885387f7e9d8e9f99ee996 *extdata/genomeData/ERR009105_accepted_hits.bam.bai
62cb3bb7d853632f228e547bcd16b6ba *extdata/genomeData/ERR009107_accepted_hits.bam
68a546216ef7759b05a2aa9b8dbb1374 *extdata/genomeData/ERR009107_accepted_hits.bam.bai
e7dd5b88e822a6d01649c88e930c0939 *extdata/genomeData/ERR009108_accepted_hits.bam
7b036dc2b4bd92ad9ea425ec0b10f3fa *extdata/genomeData/ERR009108_accepted_hits.bam.bai
af6762c3c706078bf73f0b397f6b6c11 *extdata/genomeData/ERR009112_accepted_hits.bam
fd43758392be99df1c2defc4ab2f706b *extdata/genomeData/ERR009112_accepted_hits.bam.bai
a7c312d6afa99adc5185238e32f1d7f1 *extdata/genomeData/ERR009115_accepted_hits.bam
d2f445658401094d908b74f89e1a0e19 *extdata/genomeData/ERR009115_accepted_hits.bam.bai
684c20d54e506839788197856675b788 *extdata/genomeData/ERR009116_accepted_hits.bam
27d621d809f5b0aa56939df698910d64 *extdata/genomeData/ERR009116_accepted_hits.bam.bai
4299a9e71c9f7bde9bfe05e0edad0639 *extdata/genomeData/ERR009131_accepted_hits.bam
8643e3c7613daf3ed22caeb024e1659b *extdata/genomeData/ERR009131_accepted_hits.bam.bai
db651549c7f6d8f70273350310bf20d5 *extdata/genomeData/ERR009138_accepted_hits.bam
1cd48d908051a58fe0172d9d2fa64bbb *extdata/genomeData/ERR009138_accepted_hits.bam.bai
6d9a704456df3e4fadc010b41498e324 *extdata/genomeData/ERR009144_accepted_hits.bam
741c055c2819965fd19bfcfe3f1b52ca *extdata/genomeData/ERR009144_accepted_hits.bam.bai
615b3c334d01b91cc3ec2b3d84451a35 *extdata/genomeData/ERR009145_accepted_hits.bam
dde4ed10d83271c2dfc5151e38db406d *extdata/genomeData/ERR009145_accepted_hits.bam.bai
97061f3a50fe8cfe7cced1c7d7f21716 *extdata/genomeData/ERR009148_accepted_hits.bam
e4943751d6e79ec0a3b95e6e5653295c *extdata/genomeData/ERR009148_accepted_hits.bam.bai
83b61bd8fdab9f4574d6e54899c11c38 *extdata/genomeData/ERR009151_accepted_hits.bam
bed74250589d1a31900accd1ac16fa7f *extdata/genomeData/ERR009151_accepted_hits.bam.bai
8e050e53729fa53aae31500a854ef61e *extdata/genomeData/ERR009152_accepted_hits.bam
14f3f2d9c5f12eb8365087106b5bfc55 *extdata/genomeData/ERR009152_accepted_hits.bam.bai
3a1a8e2f6aa2f81de8e5ec547c771f92 *extdata/genomeData/ERR009153_accepted_hits.bam
7b3d1fc431bcfd67a4852db18635887a *extdata/genomeData/ERR009153_accepted_hits.bam.bai
57bfe78e2e25ef99f0157a3ee823f2c7 *extdata/genomeData/ERR009159_accepted_hits.bam
1a40a83ae824435c0fa0e1b9d71a5704 *extdata/genomeData/ERR009159_accepted_hits.bam.bai
e51c4d23e3f10937b9a69bdf03606bff *extdata/genomeData/ERR009161_accepted_hits.bam
e6288d6e7dcd2f713f5214818437119a *extdata/genomeData/ERR009161_accepted_hits.bam.bai
4af52dd25d385cd64e12378929611a6b *extdata/genomeData/ERR009163_accepted_hits.bam
13e54bee01e30aa29043fb17c5d52328 *extdata/genomeData/ERR009163_accepted_hits.bam.bai
e625de3dd5cf129d25d4df4edd4ca90e *extdata/genomeData/ERR009164_accepted_hits.bam
e4ef70c073e278b73670d40527eb0ba0 *extdata/genomeData/ERR009164_accepted_hits.bam.bai
d7195944f149c25df3ae43d403c51924 *extdata/genomeData/ERR009167_accepted_hits.bam
ce19666166dcf942ca47350d73cbbfd9 *extdata/genomeData/ERR009167_accepted_hits.bam.bai
0eabae6495eb508cda4af65de8ea96ce *extdata/genomeData/SRR031812_accepted_hits.bam
957d0c166352d8e8097581db43af52bd *extdata/genomeData/SRR031812_accepted_hits.bam.bai
120d3324b67899098bcf750f91505298 *extdata/genomeData/SRR031835_accepted_hits.bam
846e944767985f3be059533169a4442e *extdata/genomeData/SRR031835_accepted_hits.bam.bai
fc5d5a972cb215a074b77f05057762f2 *extdata/genomeData/SRR031867_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031867_accepted_hits.bam.bai
694d9e1d4755895c4d1bb00417df954e *extdata/genomeData/SRR031868_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031868_accepted_hits.bam.bai
689053d7a3a8e848ecb9b8f0fa8a5f0a *extdata/genomeData/SRR031900_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031900_accepted_hits.bam.bai
cb9a53d91d66baa295ffd20e53145038 *extdata/genomeData/SRR031904_accepted_hits.bam
3e2090b5da5f6360847a869ca8917e6a *extdata/genomeData/SRR031904_accepted_hits.bam.bai
13df9abdbce268fce24146de06886804 *extdata/genomeData/SRR031914_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031914_accepted_hits.bam.bai
cfa2b756e9d66a671d003c8453744437 *extdata/genomeData/SRR031936_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031936_accepted_hits.bam.bai
e3f35ce4c5327793cf7515480c7c98e7 *extdata/genomeData/SRR031958_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031958_accepted_hits.bam.bai
01cc9ce739492a749965c885f6725e16 *extdata/genomeData/SRR031960_accepted_hits.bam
758e75c1af1c0d32db68436cb7b6165c *extdata/genomeData/SRR031960_accepted_hits.bam.bai
29eaf37df3b9425122a4d8f58fe7c14a *help/AnIndex
7d1d5bfccb0da5cf98f34a44c810e00b *help/advancedArg.html
1aa237ab6b06af5d256d5956d8777266 *help/aliases.rds
359bfc2bc2814fb2852b716ac3c65877 *help/analyzeChr.html
cfa480b0ade87de3ae668b6bef3da03f *help/annotateRegions.html
039f8c6527667213c65ae2de85d66754 *help/calculatePvalues.html
e6458cf42f05493d56a0d65d5694f642 *help/calculateStats.html
6dbc32c677961a147f65acfed074ba29 *help/coerceGR.html
d6a8c8d5bc875378c5b34915481eda28 *help/collapseFullCoverage.html
075f31a56648e5234494fad7505bb0f5 *help/coverageToExon.html
613fd26391f6fb5d9d41093c1fc5e226 *help/createBw.html
09ec8eedd5ed6cadf80141ce4b4c143e *help/createBwSample.html
ed3d237fbfaa0fbd536336ef64302421 *help/define_cluster.html
7d1d5bfccb0da5cf98f34a44c810e00b *help/derfinder-deprecated.html
ca83812f636cef919d32a604cb0d30ed *help/derfinder-package.html
ca83812f636cef919d32a604cb0d30ed *help/derfinder.html
25ce2a3fbc4a148bb3ba934a865d23bb *help/derfinder.rdb
f4b2a8d1567a8085f117169c6238b7b6 *help/derfinder.rdx
6b095d4fa548e7afa7e8f57cbbb249f4 *help/extendedMapSeqlevels.html
8796cdabfec93a4b356981f3d7263d10 *help/filterData.html
79936c3c369d8e96466be752acdc24ab *help/findRegions.html
2b895c23ba21de17a509b4e1445a78c4 *help/fullCoverage.html
14d916f357d24b7fa5b338c3cc8e3f75 *help/genomeData.html
de549f9b0a665e57471d03014455d2fb *help/genomeDataRaw.html
ff6fae4701aca79c61086202af94f978 *help/genomeFstats.html
ca3419604ce1d09c28d5cc45f6e6dbba *help/genomeInfo.html
af4f5cac707942af2e874df8e49eb579 *help/genomeRegions.html
11c554b9feff7bc91e82aa590648944a *help/genomicState.html
fb39a96e1538c86d3126cf8118c060ac *help/getRegionCoverage.html
24f1732508e945f5dbf1f1a85892c4ff *help/getTotalMapped.html
bbbe1bd18fd6153b790f3d217967314b *help/loadCoverage.html
4874ffda6fbf885fd0916d424e5864af *help/makeGenomicState.html
8e6371ea72b152b04d50cdb69564c35e *help/makeModels.html
4f2c6b84c6b3a895f4cc8348eb98320f *help/mergeResults.html
4aad6ee54f494eedfdf0055853022d8b *help/paths.rds
a21ec1cc4de412ec8bc7c020a9353b2a *help/preprocessCoverage.html
82c5416d1b3c1703a962bb205e959f83 *help/railMatrix.html
2da913964e88d741950c9b87e7f5ebfe *help/rawFiles.html
0d04f5fed91ffb8f40f7681fccdfeceb *help/regionMatrix.html
16622177c3bd77eed55ae252c79002e5 *help/sampleDepth.html
b20c11b242f4cafa1bfbb995b74da021 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3575f384f9f60f7f02917ac7b404a9ac *html/analyzeChr.html
77fa81550e8acf0c7a28531f8af3d8e6 *html/annotateRegions.html
56243f7c2823a245ba50fb12e3688d33 *html/calculatePvalues.html
4b985be63dbaac627e421ba66874c41b *html/calculateStats.html
3e0d04fd38cbd0232edab60c5b7718a5 *html/coerceGR.html
dfd8a194dfbcd8da6ca021625bb13ad2 *html/collapseFullCoverage.html
83776e68770d856f0cd48da691845733 *html/coverageToExon.html
24809bb34bbe225bd8c5bc10b0ce2f8c *html/createBw.html
2a41440c01baa03c76533d59428c0b45 *html/createBwSample.html
25ffc20e23100e1f0f4c05cab130b278 *html/define_cluster.html
9efef46b9a5926e2db29c21207d961fe *html/derfinder-deprecated.html
960ec65e9a68550939c79bbdb8c3285b *html/derfinder-package.html
319aa71e5d8a4ef4acedd366ec1db153 *html/extendedMapSeqlevels.html
cf9271e8d2f2028d8098c6fbe612acfb *html/filterData.html
8816a329c64bf26f048c07a286522767 *html/findRegions.html
b86c1b79afcfd027e8073fd8fb953096 *html/fullCoverage.html
2d2944cbdcacab8b59bff398c01ea75f *html/genomeData.html
dd0819245beff59000b503dee6fbc9ec *html/genomeDataRaw.html
37e28f8115666f4513a82284e8ca32b7 *html/genomeFstats.html
b50d5703f92cfb8eae280c952cd3eddd *html/genomeInfo.html
dd4bfcf2883a6df144514d96f68823ba *html/genomeRegions.html
a0f793e29d3deb60e4afa46de2acc187 *html/genomicState.html
b496735d5cc683e6a150a1cf68661e4b *html/getRegionCoverage.html
bd72292743eb60f5e2c6ee53890a6ab1 *html/getTotalMapped.html
829696d9259885d0c66d4c98634f24e0 *html/loadCoverage.html
36423ccb327f41c11e15731c2997e218 *html/makeGenomicState.html
18ef00d3ac80f753bc0d8d8f546684a5 *html/makeModels.html
31c9dd84fe456283ecfe8b7816916959 *html/mergeResults.html
1fef0e3304967dad871ff6221e906a9f *html/preprocessCoverage.html
a51155756adcb5323b7fe9c78fec540f *html/railMatrix.html
17d89459d8326ecaa12ec6678e72867e *html/rawFiles.html
f5d1a95e7570c34fab9095b4b027fc37 *html/regionMatrix.html
f5af80ebd8f9504c557dd1e69ff0d3d5 *html/sampleDepth.html
