Package to decouple gene sets from statistics

Documentation for package ‘decoupleR’ version 1.0.0

convert_f_defaults	Rename columns and add defaults values if column not present
convert_to_	Convert a network to run under the method of interest.
convert_to_gsva	Convert a network to run under the method of interest.
convert_to_mean	Convert a network to run under the method of interest.
convert_to_ora	Convert a network to run under the method of interest.
convert_to_pscira	Convert a network to run under the method of interest.
convert_to_scira	Convert a network to run under the method of interest.
convert_to_viper	Convert a network to run under the method of interest.
decouple	Evaluate multiple statistics with same input data
filter_regulons	Filter network by size of regulons
run_gsva	GSVA wrapper
run_mean	Weighted mean
run_ora	Over Representation Analysis - Fisher Exact Test
run_pscira	PSCIRA (Permutation Single Cell Inference of Regulatory Activity)
run_scira	SCIRA (Single Cell Inference of Regulatory Activity)
run_viper	VIPER wrapper