colorScheme |
A character vector of length 1, determining the color scheme
based on amino acid classification methods. The available colorScheme
are ""no","bulkiness_Zimmerman","hydrophobicity_KD", "hydrophobicity_HW",
"isoelectric_point_Zimmerman", "contact_potential_Maiorov",
"chemistry_property_Mahler", "consensus_similarity_SF",
"volume_Bigelow", "structure_alignments_Mirny", "polarity_Grantham",
"sequence_alignment_Dayhoff", "bulkiness_Zimmerman_group", "hydrophobicity_KD_group",
"hydrophobicity_HW_group", "charge_group", "contact_potential_Maiorov_group",
"chemistry_property_Mahler_group", "consensus_similarity_SF_group",
"volume_Bigelow_group", "structure_alignments_Mirny_group", "polarity_Grantham_group",
"sequence_alignment_Dayhoff_group", "custom" and "custom_group". If "custom" or
"custom_group" are used, users must define a grouping scheme using a list
containing sublist named as "color", and "symbol" using the function
addScheme, with group set as "NULL" or a list with same names as those of color
and symbol. No grouping was applied for the first 12 schemes. It is used to
color AAs based on similarities or group amino acids into groups of similarities..
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