07ab8c1a9f8a50d44c0a948a9d42ec7e *CITATION
4e7b6ee490c3afb34be191cce627a767 *DESCRIPTION
391f19e710140c38f44d8075d386e665 *INDEX
0792d5a7b2bc746dfc1de82a6aaef410 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
f4fd2f03f10a08418792bc63fdb5de50 *Meta/hsearch.rds
949ec75d58c85ef874df91e7bd9969d5 *Meta/links.rds
bfa7e9b542817ac74ace6be7115234ee *Meta/nsInfo.rds
3cfc13d795bf653cac1075ffff53354f *Meta/package.rds
a904cb3686cd2c64aa991adc352c935f *Meta/vignette.rds
25785db5cc9d4ca3063e36e8930b25e5 *NAMESPACE
5a3201e545c4eb6e21bc53399ed4ac0e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/customProDB
b5616d5fc168456fbac3bf85cb17fce2 *R/customProDB.rdb
437d5fa09419d056ac1bf11c6c1482f9 *R/customProDB.rdx
348b6496952842932448e8b87c12ba64 *doc/customProDB.R
740b091ad6008778e947aa177478c43d *doc/customProDB.Rnw
9a413cf5a5b58eb5eb16992e3c6255fe *doc/customProDB.pdf
8fd72a5901591709623e700fa572d239 *doc/index.html
ff6a068e7b4562eb594fa55b7095e368 *extdata/bams/test1_sort.bam
ab67676c326c959cd7fd2c015fe43ecf *extdata/bams/test1_sort.bam.bai
8344f2dbd4827a68ca402168722643da *extdata/bams/test2_sort.bam
1e22c8e2b7302cf72350bd6677a38e4c *extdata/bams/test2_sort.bam.bai
e60dd9c6071f873461d6414a1bf22ded *extdata/bams/test3_sort.bam
7e5cbe91fafc7d08f479d1bdbf5501fd *extdata/bams/test3_sort.bam.bai
70a0b41a9d6105a5d7828f710a110112 *extdata/beds/junctions1.bed
af3d1b708f46275b63ef6408fbb2b310 *extdata/beds/junctions2.bed
c18472db28002552348382aeeaf46e28 *extdata/beds/junctions3.bed
711f95cacceb8d88a14969be455a57a2 *extdata/refseq/cosmic.RData
b7d466b72e98762dda61f3ddce52d57f *extdata/refseq/dbsnpinCoding.RData
0415b426b58bf6d77829b78155285a1b *extdata/refseq/exon_anno.RData
a4c824752b35109a6951ae6cd83b3bc4 *extdata/refseq/ids.RData
715499b3f2148ebec11f50af15fca781 *extdata/refseq/procodingseq.RData
3e6a7c60a7a5fc1787a8205ffd3eb9e5 *extdata/refseq/proseq.RData
29a377ba3a01347a27e8bdc1053c96bc *extdata/refseq/splicemax.RData
341b8507da3a0345c52505525577a2e3 *extdata/refseq/txdb.sqlite
9e9ea25593d6dff684ae411b999fdda6 *extdata/refseq_coding_seq.fasta
ac9339b036da666a3ecdf39b83c06ca6 *extdata/refseq_pro_seq.fasta
394854d152a49775d8bbdb1431dd3c63 *extdata/test_mul.vcf
be3edb220ac58360aeb2db168e6f0cbd *extdata/tmp/test_indel.fasta
79d7fbc7ce8526415f2ca926a967fdaa *extdata/tmp/test_junc.fasta
859042c8502b02a2a401473062330b09 *extdata/tmp/test_rpkm.fasta
92476f93183e7f1a6a9e244ed51a0adb *extdata/tmp/test_snv.fasta
a63ce322af4afe9bebc04312f9cff3c8 *extdata/tmp/test_snv.tab
1a87eb44b5e9d9ed36718422a3d6804e *extdata/vcfs/test1.vcf
49763e2078a780b127bff285658403a6 *extdata/vcfs/test2.vcf
e057764e5e4e743bfb8f398698d31834 *extdata/vcfs/test3.vcf
bfbb508b0c5501a68f3b84360d0b9734 *help/AnIndex
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31650583a9a0c3e82e20694ad7a51cf6 *help/InputVcf.html
6faa87112446f436053169f5868a8b30 *help/JunctionType.html
ec0158e38754a1899c0636e03bdcdd3a *help/Multiple_VCF.html
85b8eb10726ad2b6ffb4b86b86829ea9 *help/OutputNovelJun.html
1bf23d721f6d9b69adc9652e70608cae *help/OutputVarprocodingseq.html
ca1c8d9ac1fb9c31fa8611f71b46e53a *help/OutputVarproseq.html
b00b84542a3fd3c951966b9d71e468b5 *help/OutputVarproseq_single.html
3d0c72f2340ca91e001d0133d9e800ce *help/Outputaberrant.html
2706b770aa7eb4db3d486c52a31097d5 *help/Outputproseq.html
76e201b4cbfa2000d6dec6b4d45138de *help/OutputsharedPro.html
38b0995f621a111320ba25e188afd72e *help/Positionincoding.html
9a5c1f18817c1209ab96146b353384ad *help/PrepareAnnotationEnsembl.html
17150762ff7deb2426f3cb71a9d60186 *help/PrepareAnnotationRefseq.html
ae89348d338fcb231708304b9a9fb4f7 *help/SharedJunc.html
e9f4a0a89595fc934dffda8cd99eb258 *help/Varlocation.html
2996e094e695ae73a3d43eced55cc219 *help/aaVariation.html
2f556f52acd60d9961456e90c0bbdb01 *help/aliases.rds
2295a211fe2466e02e1c30a26394740b *help/calculateRPKM.html
fc8266585a143c65e685df1fa0c71451 *help/customProDB.rdb
cfa82d5d8c590a0d767db3000c80c45e *help/customProDB.rdx
dfee5f51d80a349af9cfcb9c213cced1 *help/easyRun.html
9d5780f58d0326687c89bf3de4cfa1a1 *help/easyRun_mul.html
5b1a9458bde1bb29611edce6a3130165 *help/paths.rds
994e5d3bc1515954b403c7a449624fe0 *html/00Index.html
761a1ab07f27d4e745f98ad742c6cc90 *html/Bed2Range.html
0196df8d15cada8fed2e45cf04ce9144 *html/InputVcf.html
a72e9a192993cc37ce6fed9a27c38bb0 *html/JunctionType.html
e6c64e8e15a6924d2444b95976c38f30 *html/Multiple_VCF.html
6232d3345e79ffe0fd92169183e97bd4 *html/OutputNovelJun.html
dd698485b60d46344136524fd359febe *html/OutputVarprocodingseq.html
4dd3188b9446abbc0b9c7aed936b6c63 *html/OutputVarproseq.html
a673c8ab13be0e102d464260d8d058a7 *html/OutputVarproseq_single.html
90b8686f2a868425ec2ecf2653a23002 *html/Outputaberrant.html
a8bdba2dfd64b7895f55944eb1a3bd2d *html/Outputproseq.html
91ab00abfb7eff0816eabaea676f08db *html/OutputsharedPro.html
572b88ab6459ceecbd19c6e1acfb4816 *html/Positionincoding.html
4a9b8588ac4c0859267e2ba73b28c16d *html/PrepareAnnotationEnsembl.html
0ac553d10d47c2d06cc9a87709d80d39 *html/PrepareAnnotationRefseq.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
df7ca9d92ead0db79e3378525221cc6a *html/SharedJunc.html
2d0615a658fc42fb32f7df124716c5ee *html/Varlocation.html
67311c55a00b7845410b03b749923c8c *html/aaVariation.html
174640c9956581d3ab9f1731ba7ada96 *html/calculateRPKM.html
866498cd6fab31edc8470e890b37e8b7 *html/easyRun.html
317ad13d4a42befcc0eaf32778201a6b *html/easyRun_mul.html
