BiodbCompounddbConn-class
                        An interface for all compound databases.
BiodbConfig-class       A class for storing configuration values.
BiodbConn-class         The mother abstract class of all database
                        connectors.
BiodbConnBase-class     Base class of 'BiodbConn' for encapsulating all
                        needed information for database access.
BiodbConnObserver-class
                        The observer class of connectors.
BiodbCsvEntry-class     Entry class for content in CSV format.
BiodbDbInfo-class       A class for describing the characteristics of a
                        database.
BiodbDbsInfo-class      A class for describing the available databases.
BiodbDownloadable-class
                        An abstract class (more like an interface) to
                        model a remote database that can be downloaded
                        locally.
BiodbEditable-class     An interface to model an editable database.
BiodbEntry-class        The mother abstract class of all database entry
                        classes.
BiodbEntryField-class   A class for describing an entry field.
BiodbEntryFields-class
                        A class for handling description of all entry
                        fields.
BiodbFactory-class      A class for constructing biodb objects.
BiodbHtmlEntry-class    Entry class for content in HTML format.
BiodbJsonEntry-class    Entry class for content in JSON format.
BiodbListEntry-class    Entry class for content in list format.
BiodbMain-class         The central class of the biodb package.
BiodbMassdbConn-class   The mother class of all Mass spectra databases.
BiodbObserver-class     The mother abstract class of all observer
                        classes.
BiodbPersistentCache-class
                        A class for handling file caching.
BiodbRemotedbConn-class
                        The mother class of all remote database
                        connectors.
BiodbRequest            Class Request.
BiodbRequestScheduler-class
                        Class for handling requests.
BiodbRequestSchedulerRule
                        Scheduler rule class.
BiodbSdfEntry-class     Entry class for content in SDF format.
BiodbSqlBinaryOp        This class represents an SQL binary operator.
BiodbSqlExpr            The SQL Expression abstact class.
BiodbSqlField           This class represents an SQL field.
BiodbSqlList            This class represents an SQL list.
BiodbSqlLogicalOp       This class represents an SQL logical operator.
BiodbSqlQuery           This class handles an SQL Query.
BiodbSqlValue           This class represents an SQL value.
BiodbTestMsgAck-class   A class for acknowledging messages during
                        tests.
BiodbTxtEntry-class     Entry class for content in text format.
BiodbUrl                Class URL.
BiodbWritable-class     An abstract class (more like an interface) to
                        model a writable database.
BiodbXmlEntry-class     Entry class for content in XML format.
CompCsvFileConn-class   Compound CSV File connector class.
CompCsvFileEntry-class
                        Compound CSV File entry class.
CompSqliteConn-class    Class for handling a Compound database in
                        SQLite format.
CompSqliteEntry-class   Compound SQLite entry class.
CsvFileConn-class       CSV File connector class.
ExtConnClass            Extension connector clas
ExtCpp                  Extension C++ code class
ExtDefinitions          Extension defintions file class
ExtDescriptionFile      Extension DESCRIPTION file
ExtEntryClass           Extension entry class
ExtFileGenerator        Extension file generator abstract class
ExtGenerator            Extension generator abstract class
ExtGitignore            Extension Gitignore file class
ExtLicense              Extension license
ExtMakefile             Extension Makefile
ExtPackage              Extension package class
ExtPackageFile          Extension package file class.
ExtRbuildignore         Extension Rbuildignore file class
ExtReadme               Extension README file class
ExtTests                Extension tests class
ExtTravisFile           Extension Travis YAML file generator class
ExtVignette             Extension vignette class
FileTemplate            File template class.
MassCsvFileConn-class   Mass CSV File connector class.
MassCsvFileEntry-class
                        Mass CSV File entry class.
MassSqliteConn-class    Class for handling a Mass spectrometry database
                        in SQLite format.
MassSqliteEntry-class   Mass spectra SQLite entry class.
Progress                Progress class.
Range                   Range class.
SqliteConn-class        SQLite connector class.
biodb-package           biodb: biodb, a library and a development
                        framework for connecting to chemical and
                        biological databases
closeMatchPpm           Close match PPM
connNameToClassPrefix   Convert connector name into class prefix.
createBiodbTestInstance
                        Creating a BiodbMain instance for tests.
df2str                  Convert a data.frame into a string.
error                   Throw an error and log it too.
error0                  Throw an error and log it too.
genNewExtPkg            Generate a new extension package for biodb.
getConnClassName        Get connector class name.
getConnTypes            Get connector types.
getEntryClassName       Get entry class name.
getEntryTypes           Get entry types.
getLicenses             Get the available licenses for extension
                        packages.
getLogger               Get the main package logger.
getPkgName              Get the package name from a package folder
                        path.
getReposName            Extract the repository name from a package
                        folder.
getTestOutputDir        Get the test output directory.
listTestRefEntries      List test reference entries.
logDebug                Log debug message.
logDebug0               Log debug message.
logInfo                 Log information message.
logInfo0                Log information message.
logTrace                Log trace message.
logTrace0               Log trace message.
lst2str                 Convert a list into a string.
newInst                 Create a new BiodbMain instance.
runGenericTests         Run generic tests.
testContext             Set a test context.
testThat                Run a test.
upgradeExtPkg           Upgrading an existing extension package for
                        biodb.
warn                    Throw a warning and log it too.
warn0                   Throw a warning and log it too.
