Differential cell-type-specific allelic imbalance

Documentation for package ‘airpart’ version 1.0.1

allelicRatio	Fit beta-binomial across cell types
cellQC	Quality control on cells
consensusPart	Consensus Partitions
estDisp	Estimate overdispersion parameter of a beta-binomial
featureQC	Quality control on features
fusedLasso	Generalized fused lasso to partition cell types by allelic imbalance
geneCluster	Gene clustering based on allelic ratio matrix with pseudo-count
makeForest	Plot allelic ratio result as forest
makeHeatmap	Plot allelic ratio as heatmap
makeSimulatedData	Make simulated data for airpart
makeViolin	Posterior mean allelic ratio estimates in violin plots
preprocess	Preprocess the SingleCellExperiment
summaryAllelicRatio	Allelic ratio summary
wilcoxExt	Extension on Pairwise Mann Whitney Wilcoxon Test for partitioning