![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| VariantExperiment-package | VariantExperiment: A package to represent VCF / GDS files using standard SummarizedExperiment metaphor with on-disk representation. |
| altDosage-method | Statistical functions for 'VariantExperiment' objects. |
| countSingletons-method | Statistical functions for 'VariantExperiment' objects. |
| gdsfile-method | VariantExperiment-class |
| heterozygosity-method | Statistical functions for 'VariantExperiment' objects. |
| homozygosity-method | Statistical functions for 'VariantExperiment' objects. |
| hwe-method | Statistical functions for 'VariantExperiment' objects. |
| inbreedCoeff-method | Statistical functions for 'VariantExperiment' objects. |
| isSNV-method | Statistical functions for 'VariantExperiment' objects. |
| isVariant-method | Statistical functions for 'VariantExperiment' objects. |
| loadVariantExperiment | loadVariantExperiment to load the GDS back-end SummarizedExperiment object into R console. |
| makeVariantExperimentFromGDS | ShowAvailable |
| makeVariantExperimentFromVCF | The function to convert VCF files directly into VariantExperiment object. |
| meanBySample-method | Statistical functions for 'VariantExperiment' objects. |
| pca-method | Statistical functions for 'VariantExperiment' objects. |
| refDosage-method | Statistical functions for 'VariantExperiment' objects. |
| saveVariantExperiment | saveVariantExperiment Save all the assays in GDS format, including in-memory assays. Delayed assays with delayed operations on them are realized while they are written to disk. |
| seqAlleleCount | Statistical functions for 'VariantExperiment' objects. |
| seqAlleleCount-method | Statistical functions for 'VariantExperiment' objects. |
| seqAlleleFreq | Statistical functions for 'VariantExperiment' objects. |
| seqAlleleFreq-method | Statistical functions for 'VariantExperiment' objects. |
| seqMissing | Statistical functions for 'VariantExperiment' objects. |
| seqMissing-method | Statistical functions for 'VariantExperiment' objects. |
| seqNumAllele-method | Statistical functions for 'VariantExperiment' objects. |
| showAvailable | ShowAvailable |
| titv-method | Statistical functions for 'VariantExperiment' objects. |
| VariantExperiment | VariantExperiment-class |
| VariantExperiment-class | VariantExperiment-class |
| VariantExperiment-methods | Statistical functions for 'VariantExperiment' objects. |