# Generated by roxygen2: do not edit by hand

export(VariantExperiment)
export(gdsfile)
export(loadVariantExperiment)
export(makeVariantExperimentFromGDS)
export(makeVariantExperimentFromVCF)
export(saveVariantExperiment)
export(showAvailable)
exportClasses(VariantExperiment)
exportMethods(altDosage)
exportMethods(countSingletons)
exportMethods(heterozygosity)
exportMethods(homozygosity)
exportMethods(hwe)
exportMethods(inbreedCoeff)
exportMethods(isSNV)
exportMethods(isVariant)
exportMethods(meanBySample)
exportMethods(pca)
exportMethods(refDosage)
exportMethods(seqAlleleCount)
exportMethods(seqAlleleFreq)
exportMethods(seqMissing)
exportMethods(seqNumAllele)
exportMethods(titv)
import(DelayedDataFrame)
import(GDSArray)
import(S4Vectors)
import(SNPRelate)
import(SeqArray, except = c(colData, rowRanges))
import(SummarizedExperiment)
import(gdsfmt)
importFrom(Biostrings,DNAStringSet)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,ranges)
importFrom(GenomicRanges,seqnames)
importFrom(IRanges,CharacterList)
importFrom(IRanges,IRanges)
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,setNames)
importFrom(tools,file_path_as_absolute)
importFrom(utils,read.table)
importMethodsFrom(DelayedArray,sub)
importMethodsFrom(SeqArray,info)
importMethodsFrom(SeqVarTools,altDosage)
importMethodsFrom(SeqVarTools,countSingletons)
importMethodsFrom(SeqVarTools,heterozygosity)
importMethodsFrom(SeqVarTools,homozygosity)
importMethodsFrom(SeqVarTools,hwe)
importMethodsFrom(SeqVarTools,inbreedCoeff)
importMethodsFrom(SeqVarTools,isSNV)
importMethodsFrom(SeqVarTools,isVariant)
importMethodsFrom(SeqVarTools,meanBySample)
importMethodsFrom(SeqVarTools,pca)
importMethodsFrom(SeqVarTools,refDosage)
importMethodsFrom(SeqVarTools,titv)
