# Generated by roxygen2: do not edit by hand

export(addIds)
export(addPrefix)
export(clusterCheck)
export(clusterList)
export(combineGenes)
export(createClusters)
export(createClusters2)
export(cytoMake)
export(dataMiningMatrix)
export(diffExpressRes)
export(dloadGmt)
export(dloadMirdb)
export(dloadMirtarbase)
export(dloadTargetscan)
export(eNames)
export(enrichWiki)
export(genesList)
export(getIdsMir)
export(getIdsMrna)
export(gmtEnsembl)
export(linearRegr)
export(makeDynamic)
export(makeMapp)
export(makeNet)
export(matrixFilter)
export(mirMrnaInt)
export(multiReg)
export(quickBar)
export(quickCrossCorr)
export(quickDMap)
export(quickDendro)
export(quickFuzz)
export(quickHClust)
export(quickMap)
export(quickNet)
export(quickPathwayTC)
export(quickReg)
export(quickTC)
export(quickTCPred)
export(reduceWiki)
export(returnCluster)
export(savePlots)
export(significantVals)
export(startObject)
export(turnPercent)
export(wikiList)
export(wikiMatrix)
export(wikiMrna)
import(gghighlight)
importFrom(FreqProf,approxm)
importFrom(Mfuzz,filter.std)
importFrom(Mfuzz,mestimate)
importFrom(Mfuzz,mfuzz)
importFrom(Mfuzz,mfuzz.plot2)
importFrom(Mfuzz,overlap)
importFrom(Mfuzz,overlap.plot)
importFrom(Mfuzz,standardise)
importFrom(MultiAssayExperiment,MultiAssayExperiment)
importFrom(RCy3,createNetworkFromDataFrames)
importFrom(RCy3,cytoscapePing)
importFrom(RCy3,layoutNetwork)
importFrom(RCy3,setVisualStyle)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,enricher)
importFrom(clusterProfiler,read.gmt)
importFrom(clusterProfiler,setReadable)
importFrom(dplyr,filter)
importFrom(dplyr,inner_join)
importFrom(dplyr,select)
importFrom(ggdendro,ggdendrogram)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,unit)
importFrom(gplots,heatmap.2)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,png)
importFrom(grDevices,svg)
importFrom(grDevices,tiff)
importFrom(grDevices,x11)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(gtools,mixedsort)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,graph_from_data_frame)
importFrom(rWikiPathways,getPathwayInfo)
importFrom(rWikiPathways,getXrefList)
importFrom(rWikiPathways,listPathways)
importFrom(readxl,read_excel)
importFrom(reshape2,melt)
importFrom(scales,rescale)
importFrom(stats,as.formula)
importFrom(stats,as.ts)
importFrom(stats,ave)
importFrom(stats,ccf)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,confint.default)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,reorder)
importFrom(stringr,"%>%")
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_replace_all)
importFrom(tidyr,drop_na)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
