accessors	accessors
beads_oligo	accessors
beads_oligo,TsIO-method	TsIO-class
beads_oligo<-	accessors
beads_oligo<-,TsIO-method	TsIO-class
blastPrimers	estimateOffTargets
blastPrimers,TsIO-method	estimateOffTargets
blastPrimers,TsIOList-method	estimateOffTargets
bone_marrow_genex	bone_marrow_genex
checkPrimers	checkPrimers
checkPrimers,TsIO-method	checkPrimers
checkPrimers,TsIOList-method	checkPrimers
check_tool_installation	check_tool_installation
chr11_genes	chr11_genes
chr11_polyA_sites	chr11_polyA_sites
chr11_primers	chr11_primers
chr11_truncated_txs	chr11_truncated_txs
chr11_truncated_txs_seq	chr11_truncated_txs_seq
createBLASTDb	estimateOffTargets
createIORecord	createIORecord
createIORecord,TsIO-method	createIORecord
createIORecord,TsIOList-method	createIORecord
createPrimerTrack	exportPrimers
createPrimerTrack,TsIO-method	exportPrimers
createPrimerTrack,TsIOList-method	exportPrimers
designPrimers	designPrimers
designPrimers,TsIO-method	designPrimers
designPrimers,TsIOList-method	designPrimers
estimateOffTargets	estimateOffTargets
exportPrimers	exportPrimers
exportPrimerTrack	exportPrimers
getTxsSeq	getTxsSeq
getTxsSeq,GRanges-method	getTxsSeq
getTxsSeq,GRangesList-method	getTxsSeq
get_gt_sequences	get_gt_sequences
inferPolyASites	inferPolyASites
min_primer_region	accessors
min_primer_region,TsIO-method	TsIO-class
min_primer_region<-	accessors
min_primer_region<-,TsIO-method	TsIO-class
parsePrimer3Output	parsePrimer3Output
pcr_products	accessors
pcr_products,TsIO-method	TsIO-class
pcr_products,TsIOList-method	TsIOList-class
pickPrimers	pickPrimers
pickPrimers,TsIO-method	pickPrimers
pickPrimers,TsIOList-method	pickPrimers
plotTargetGenes	selectTargetGenes
primerDataFrame	exportPrimers
primerDataFrame,TsIO-method	exportPrimers
primerDataFrame,TsIOList-method	exportPrimers
primer_max_tm	accessors
primer_max_tm,TsIO-method	TsIO-class
primer_max_tm<-	accessors
primer_max_tm<-,TsIO-method	TsIO-class
primer_min_tm	accessors
primer_min_tm,TsIO-method	TsIO-class
primer_min_tm<-	accessors
primer_min_tm<-,TsIO-method	TsIO-class
primer_num_return	accessors
primer_num_return,TsIO-method	TsIO-class
primer_num_return<-	accessors
primer_num_return<-,TsIO-method	TsIO-class
primer_opt_tm	accessors
primer_opt_tm,TsIO-method	TsIO-class
primer_opt_tm<-	accessors
primer_opt_tm<-,TsIO-method	TsIO-class
product_size_range	accessors
product_size_range,TsIO-method	TsIO-class
product_size_range<-	accessors
product_size_range<-,TsIO-method	TsIO-class
reverse_primer	accessors
reverse_primer,TsIO-method	TsIO-class
reverse_primer<-	accessors
reverse_primer<-,TsIO-method	TsIO-class
selectTargetGenes	selectTargetGenes
sequence_id	accessors
sequence_id,TsIO-method	TsIO-class
sequence_id,TsIOList-method	TsIOList-class
sequence_id<-	accessors
sequence_id<-,TsIO-method	TsIO-class
sequence_template	accessors
sequence_template,TsIO-method	TsIO-class
sequence_template,TsIOList-method	TsIOList-class
TAPseq	TAPseq
TAPseqInput	TAPseqInput
tapseq_primers	accessors
tapseq_primers,TsIO-method	TsIO-class
tapseq_primers,TsIOList-method	TsIOList-class
target_annot	accessors
target_annot,TsIO-method	TsIO-class
target_annot,TsIOList-method	TsIOList-class
target_annot<-	accessors
target_annot<-,TsIO-method	TsIO-class
target_sequence	accessors
target_sequence,TsIO-method	TsIO-class
target_sequence,TsIOList-method	TsIOList-class
target_sequence<-	accessors
target_sequence<-,TsIO-method	TsIO-class
truncateTxsPolyA	truncateTxsPolyA
truncateTxsPolyA,GRanges-method	truncateTxsPolyA
truncateTxsPolyA,GRangesList-method	truncateTxsPolyA
TsIO	TsIO-class
TsIO-class	TsIO-class
TsIOList	TsIOList-class
TsIOList-class	TsIOList-class
