| svmExternalData {SubCellBarCode} | R Documentation |
Peptide/exon/transcript centric or PTM enriched classification is applied to predict localization of them.
svmExternalData(df, modelA, modelB)
df, |
data frame fractionated additional data |
modelA, |
model for the replicate A classification |
modelB, |
model for the replicate B classification |
c.cls.df
{
df <- loadData(SubCellBarCode::hcc827Ctrl)
c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])
set.seed(7)
c.prots <- sample(c.prots, 550)
cls <- svmClassification(c.prots, df, markerProteins)
modelA <- cls[[1]]$model
modelB <- cls[[2]]$model
exon.cls <- svmExternalData(SubCellBarCode::hcc827exon,
modelA = modelA, modelB = modelB)
}