# Generated by roxygen2: do not edit by hand

export(BaitCapture)
export(BinMethylation)
export(CallContextMethylation)
export(ConversionRate)
export(DetectExperimentType)
export(FilterByConversionRate)
export(FilterContextCytosines)
export(GetQuasRprj)
export(GetSingleMolMethMat)
export(PlotAvgSMF)
export(PlotSM)
export(PlotSingleSiteSMF)
export(SampleCorrelation)
export(SortReads)
export(SortReadsBySingleTF)
export(SortReadsByTFCluster)
export(StateQuantificationPlot)
import(BiocGenerics)
import(Biostrings)
import(GenomicRanges)
import(QuasR)
importFrom(BSgenome,getSeq)
importFrom(BiocGenerics,grep)
importFrom(Biostrings,vcountPattern)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,isEmpty)
importFrom(IRanges,resize)
importFrom(IRanges,subsetByOverlaps)
importFrom(QuasR,qCount)
importFrom(QuasR,qMeth)
importFrom(RColorBrewer,brewer.pal)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.list)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(plyr,rbind.fill.matrix)
importFrom(stats,dist)
importFrom(stats,hclust)
