c1d41dea99cf171559093626a7d7d776 *DESCRIPTION
b2b2b287b8ba1d5aa7e9b5e65485fdec *INDEX
3f1e0d649390d19c0f62d19f96d7f50e *Meta/Rd.rds
d86f3ed4b5cfa6ab149e2157b3bc0992 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
8ebf5eabf73c58c73d2f2aa0a0282b00 *Meta/hsearch.rds
c2503c3484079a9a0460b786ff9be252 *Meta/links.rds
7097fe589b2f1c61a33b42ce92dce2f3 *Meta/nsInfo.rds
ccc573949f5639098d8a296657f7f0cd *Meta/package.rds
80625aaf6e2d78e2ecf2413b66da943b *Meta/vignette.rds
285666babd84f86c2ea1e88c9483c613 *NAMESPACE
d10835bf558ae421b3f8d61660d28d1d *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/SNPhood
b522f8b226093d70a1bf5948d8dae3de *R/SNPhood.rdb
b675cdf887f0734076b0c842313dab39 *R/SNPhood.rdx
28b77cdad3e5184b2202bad18cd0eb5e *data/Rdata.rdb
12a2bdebbab4b9d18e277959d728ee24 *data/Rdata.rds
86eec309af8c333c05bb703ca1060831 *data/Rdata.rdx
fe0e99d5fb14e25b56fb8ea4e44859f6 *doc/IntroductionToSNPhood.R
0f7dff87ed06232fd9e39e5bd50f59b6 *doc/IntroductionToSNPhood.Rmd
8c6cabaa13ce90b82caa15185b6cf290 *doc/IntroductionToSNPhood.html
d99f256d81371827c643cc3ee35e0a82 *doc/index.html
de6bde59900ba72ce48fe3af46cd90bf *doc/workflow.R
ed959ded83255ac9a6b5f3be1915797e *doc/workflow.Rmd
3bd65467cc621458191d5e3acead494f *doc/workflow.html
7fd2487343407f8b9316fe64c65db1b7 *help/AnIndex
da8da1f602be557e202a557d1019711c *help/SNPhood-class.html
9fa8e90c4773314d4c1185b14b70563c *help/SNPhood-data.html
514086bb6403dabaee296f205e6b9905 *help/SNPhood-package.html
514086bb6403dabaee296f205e6b9905 *help/SNPhood.html
9fa8e90c4773314d4c1185b14b70563c *help/SNPhood.o.html
7b52606e8d958ea375c9143e350ced71 *help/SNPhood.rdb
3b402ddfee15013a309ae0930e7c15a0 *help/SNPhood.rdx
b8c58751789eec677a1da574ea6ca95e *help/aliases.rds
eb8ba38af3fbbc7ad895e6d1bd3050bd *help/analyzeSNPhood.html
ac477ec6ef9abbb0dfebdca15dddab9e *help/annotation,SNPhood-method.html
ac477ec6ef9abbb0dfebdca15dddab9e *help/annotation-methods.html
ac477ec6ef9abbb0dfebdca15dddab9e *help/annotation.html
4c269ca316a1baa87a3f7f4bd7a26224 *help/annotationBins.html
f627481713f03a33cf4e6cbc2ff55f23 *help/annotationBins2.html
8e2c6bef71f0358dbba60567084245b5 *help/annotationDatasets.html
985ea6f98b3b21e83ffda792b7515ace *help/annotationReadGroups.html
427d93a43684dbd11597d18501d5df8a *help/annotationRegions.html
9d99394def421cbed0b2db7b4400cb9a *help/associateGenotypes.html
af6870051532b7e0a5dbcd87af4bb7a6 *help/bins-methods.html
af6870051532b7e0a5dbcd87af4bb7a6 *help/bins.html
174d0d06731bbd4c2227edadf8946abc *help/changeObjectIntegrityChecking.html
9cab10ea1bbdf64af9f11fdd1789efc1 *help/collectFiles.html
1090f14764f4793c96d3e70e83e0df39 *help/convertToAllelicFractions.html
8d5d4bc4e16ceacb816889c97a34270a *help/counts,SNPhood-method.html
8d5d4bc4e16ceacb816889c97a34270a *help/counts-method.html
8d5d4bc4e16ceacb816889c97a34270a *help/counts.html
ac0ad7972ac3e7ea9979385832358bb3 *help/datasets-methods.html
ac0ad7972ac3e7ea9979385832358bb3 *help/datasets.html
79c66fcf1b6c17eec694694b4d8290c7 *help/deleteDatasets.html
8ca4a9e7141c81b854d3c5371bd4116d *help/deleteReadGroups.html
aec2a68ffda18d4ca024a942970475fe *help/deleteRegions.html
dc0cbddd64bf827ff2eec64db18695d5 *help/enrichment,SNPhood-method.html
dc0cbddd64bf827ff2eec64db18695d5 *help/enrichment-methods.html
dc0cbddd64bf827ff2eec64db18695d5 *help/enrichment.html
c8c5695a7654ff9924a7d1727afa3caa *help/getDefaultParameterList.html
525d6d58ee84bf4093ab6af608558a08 *help/mergeReadGroups.html
af6870051532b7e0a5dbcd87af4bb7a6 *help/nBins.html
ac0ad7972ac3e7ea9979385832358bb3 *help/nDatasets.html
e1b1a47a971d1e6271b5ab20b733fe70 *help/nReadGroups.html
9afa672af3857bc1667a334c2449a875 *help/nRegions.html
ceef0bdbc2793d77836766b0a4fcfecd *help/parameters,SNPhood-method.html
ceef0bdbc2793d77836766b0a4fcfecd *help/parameters-methods.html
ceef0bdbc2793d77836766b0a4fcfecd *help/parameters.html
f3c3d6143eaf7fc8a5bce54d3ccd73e3 *help/paths.rds
e960db0b6468377c57da1465db99efde *help/plotAllelicBiasResults.html
7dbfde40acf5e14bc37d0abd12c7aed9 *help/plotAllelicBiasResultsOverview.html
a4557ebc92493947e88c358c19849a66 *help/plotAndCalculateCorrelationDatasets.html
e0603adba1c24ebbc7b871d02df38af4 *help/plotAndCalculateWeakAndStrongGenotype.html
91792d82a574f1cbbd3e90c265e70ac4 *help/plotAndClusterMatrix.html
b48387475371f303c73f1b4cafacdcc8 *help/plotAndSummarizeAllelicBiasTest.html
4a81d0b1fe2b0ae11b656be53a28817b *help/plotBinCounts.html
3fa613860bbb394a2a4c2fe59fcf927d *help/plotClusterAverage.html
b89b3066c4de8cfd7c9be65c1954d449 *help/plotFDRResults.html
1ef1538dcbe9d919f6a1554d95f2e991 *help/plotGenotypesPerCluster.html
a3c7189e27b96f648fb60549387a6bb6 *help/plotGenotypesPerSNP.html
bd21bb1fa1d69a160330cb2304becf7e *help/plotRegionCounts.html
e1b1a47a971d1e6271b5ab20b733fe70 *help/readGroups-methods.html
e1b1a47a971d1e6271b5ab20b733fe70 *help/readGroups.html
9afa672af3857bc1667a334c2449a875 *help/regions-methods.html
9afa672af3857bc1667a334c2449a875 *help/regions.html
119d0239c539e049a1d017cd02f7469b *help/renameBins.html
52ac780f7da9aa4e4f533d621757503d *help/renameDatasets.html
821c0b017fd836549256ad9dd5859194 *help/renameReadGroups.html
3b3b227ce549be5584b0f6f61c48daa1 *help/renameRegions.html
d5a50003d5241f1bea7bfc6f5d83073d *help/results.html
dbab8852063ed36cbb76a6dffb68d16c *help/testForAllelicBiases.html
a417f6c842c1fa5de6efb8c7192923e7 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
91a667c9ea41c82882c4af4960813d69 *html/SNPhood-class.html
12f3d66ed2ad55ba69fb043d8c190a6d *html/SNPhood.html
cbea7db46245ba484a910a4d3b85c9f6 *html/SNPhood.o.html
10f8797e184768212b032215bbac0f8d *html/analyzeSNPhood.html
bcbd30aa3a55644779c94972b4876b81 *html/annotation-methods.html
31000de2b4160e0af89d3536d8e0536d *html/annotationBins.html
fe8c55409c0fc0777c2e14f0e8695a5f *html/annotationBins2.html
1dc0928dc6c90a597f1d09cd2c76d199 *html/annotationDatasets.html
ffa5d0e92d035bbde217523ea12f0d3e *html/annotationReadGroups.html
e680f8732c233774fce811c153944d55 *html/annotationRegions.html
da9c965b20117827bb81b0be752ce757 *html/associateGenotypes.html
9ecdde6e40a808abf395c88a6baed709 *html/bins-methods.html
a25e63ffdfdf5ae15cc9e93db1ce61ec *html/changeObjectIntegrityChecking.html
d73341a021420bce0bd19dd521297729 *html/collectFiles.html
695d20d5db6a5ab93faa1b04eff1388d *html/convertToAllelicFractions.html
fda24ec19e2d733b000f97072eae99b2 *html/counts-method.html
0a47d79b68267d34d61026bb2a86b477 *html/datasets-methods.html
3afec469ef14e3ed4fd631e2b81cf39e *html/deleteDatasets.html
718a1ca8ff3cbc15d08b4fb53b51d0f5 *html/deleteReadGroups.html
582472739c415b77acdbd645bb20f2d7 *html/deleteRegions.html
a2935bab05d8a59ba489511cb3d14662 *html/enrichment-methods.html
857608ccfd41c8194ed737bbf49d1451 *html/getDefaultParameterList.html
2c2a5172b789b690045723686ddbde96 *html/mergeReadGroups.html
cf9aad473e37ea199a5ef548b7c27741 *html/parameters-methods.html
622a90b5e0047869b178e8b6fa3f0e53 *html/plotAllelicBiasResults.html
33219f0ee39c526e2b20d212c5a36039 *html/plotAllelicBiasResultsOverview.html
47fe8e111e40013927ec636bad022dad *html/plotAndCalculateCorrelationDatasets.html
b46d2dd7e924e4e4d88e89b938711028 *html/plotAndCalculateWeakAndStrongGenotype.html
daba89e428d2fec026c776aa23ed75fc *html/plotAndClusterMatrix.html
ccf79c446aa2318f0b7128866744c6e7 *html/plotAndSummarizeAllelicBiasTest.html
ca33b4a428049a35ae2a75a3235a66ae *html/plotBinCounts.html
07f9df33430c792915bd1aace1666e30 *html/plotClusterAverage.html
2df0783d0079c2531efba4a780841ed5 *html/plotFDRResults.html
775c87fbf80a19fbc9d7168297ce263f *html/plotGenotypesPerCluster.html
b0f8c316cb8afe01f1228d3fa826b0ac *html/plotGenotypesPerSNP.html
2b98085a79cca6ec059e10ad75cadd1f *html/plotRegionCounts.html
4ff5c5c0fe153e2d2a8656f1278fcd3a *html/readGroups-methods.html
46e54df7fde5a2961873e7333d491ea0 *html/regions-methods.html
ec0b0b7e5678675544d3fa969febd4f9 *html/renameBins.html
d01707d9047499ea5b7cb934facf57a9 *html/renameDatasets.html
5c742973fa0d117c7b92590cddfbc6ee *html/renameReadGroups.html
4fe216959b51791a8f5145d46d447bac *html/renameRegions.html
b1557f82029948474f641f4c993a0d89 *html/results.html
e4194fbf7373860bd2b68e3bc0b4d37f *html/testForAllelicBiases.html
