d20835f88bd22142a9e20378b48259ab *CITATION
017ad5d17568c589b73d4308e4c3247f *DESCRIPTION
b84285fd81e5df2c4498f2a793e93a60 *INDEX
ac4b5e3835d1acdbcd11e3b25ba49fc1 *Meta/Rd.rds
b9e4761cda319ed75c462d4026f9ab44 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
f63cb36269bfa7416c2c6db62e57cbd6 *Meta/hsearch.rds
f7092e89df3caad018b7510d2d1a6bd2 *Meta/links.rds
011977feebd36921d609761cdc058867 *Meta/nsInfo.rds
d32642d4ab4ab7d134462b49e1c39d2d *Meta/package.rds
d41474b9f50c3a538053c8cf2e672440 *Meta/vignette.rds
1ab1add7ba1a9d31de239f03a1b8e4df *NAMESPACE
3074558f8e5fc1f3e10727d5ba1cb319 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/SIAMCAT
4d911079565612bc11101f1c5de47e7c *R/SIAMCAT.rdb
94bf6eab4285593d3e3adae2b2a43bd0 *R/SIAMCAT.rdx
c5777848e0d1490a06a58ff209c148a9 *_pkgdown.yml
591ab74371bbff1108897a99bc5a0a3f *data/Rdata.rdb
79d6ac8e2b3647eb6f4940d2f64583a5 *data/Rdata.rds
bfdb238b34bf64c1c2cbcb456d859e5e *data/Rdata.rdx
ee9a8746740daa4681e5eaded36389d5 *doc/SIAMCAT_confounder.R
00bf7220fd024103ae08d0e966926f70 *doc/SIAMCAT_confounder.Rmd
3fc5fb4b1880b0538f8b005806b29746 *doc/SIAMCAT_confounder.html
2815b3fd15e12422d274d4cdde2a2613 *doc/SIAMCAT_holdout.R
9a7a2cd6fb094ce1a4bdf80c38447c5e *doc/SIAMCAT_holdout.Rmd
a18345d532a2f8a8fe89dd08eae776e0 *doc/SIAMCAT_holdout.html
04e0de55899ff7a5ac3f89169411087c *doc/SIAMCAT_meta.R
f4d2d8342bd0173cfe19d497790b7737 *doc/SIAMCAT_meta.Rmd
aa847d082733d9d1faaf9cac44c64e1b *doc/SIAMCAT_meta.html
411ba5d84ca11d0e0af285b93dc25dbc *doc/SIAMCAT_ml_pitfalls.R
a733289d3afac86b9dfdc272e52129ed *doc/SIAMCAT_ml_pitfalls.Rmd
425e3ca73b044ec0955a2cc65b8fd8cc *doc/SIAMCAT_ml_pitfalls.html
0cc06dcf04d71fb6161b9cd8c2417854 *doc/SIAMCAT_read-in.R
40807b1fcbd7979f621215fb9082e745 *doc/SIAMCAT_read-in.Rmd
15039cb58c96e43dd1f241252c93b40d *doc/SIAMCAT_read-in.html
df3c26fdc4edd0c8d374fb212da43f8f *doc/SIAMCAT_vignette.R
ff2950151ed19368a1696169d6209da9 *doc/SIAMCAT_vignette.Rmd
39b71cfa55e450b8ea81a09e43c6c6a2 *doc/SIAMCAT_vignette.html
6d1a1766ed34cc13b7be46346b74bc80 *doc/index.html
f303c2e2684d2b14c4c57705d11f2f02 *extdata/LEfSe_crc_zeller_msb_mocat_specI.tsv
deb89a86d7fa1a19a3d5126e945dbe9e *extdata/cd_meta_auroc.tsv
431ae38e937325902e606cb1683d9f56 *extdata/cd_meta_weights.tsv
9c4ddf5fd7f4230435bc197c313d059c *extdata/feat_crc_zeller_msb_mocat_specI.tsv
7ef06cb3e9fbfa4adc70953e8b163777 *extdata/label_crc_zeller_msb_mocat_specI.tsv
05752260a21aa59997d854da7f17bd3d *extdata/maaslin.pcl
8b7974f992a3b47f5502e0c8a6b0599f *extdata/maaslin.tsv
f5dc74eb35cfc793ea9dedd811f3ccae *extdata/num_metadata_crc_zeller_msb_mocat_specI.tsv
00467dc740b09e5ff8b7104a338e5217 *help/AnIndex
9e79f964f42f5dae149245e543cd2af4 *help/SIAMCAT-package.html
7bf2b879e72e113c02436177a9970c9d *help/SIAMCAT.html
ea50e7ceecc1945ad6cab22320a3b9d1 *help/SIAMCAT.rdb
251eb96009c6b5e657762a2eb1169218 *help/SIAMCAT.rdx
268dde94c059449b7c5bd36e34c55d21 *help/accessSlot.html
90e0d885e2c59938c3cdd66d6c9bdd45 *help/add.meta.pred.html
81c89d3a945f3b86cd40553d5acee2b1 *help/aliases.rds
ce8544662edf3e278a2d54b737da93f7 *help/assign-associations.html
8397583fa02d1a24d978550782e1619d *help/assign-data_split.html
c895a4ba6dd33c0eb376ddd2fa2d94d6 *help/assign-eval_data.html
4e6015c0b06f6b31ed5a79838c7fcb0b *help/assign-filt_feat.html
6d036fc63ae214c9c788271f9c9248b5 *help/assign-label.html
c720b045c4ce9e154a0f7b7e4acaf05b *help/assign-meta.html
ef01e9885a4d54926c1bd5504aa4a68d *help/assign-model_list.html
8bf945bdf941bf7604c127445070a8bb *help/assign-norm_feat.html
a207ddafdc64e42b7079b80612329c56 *help/assign-orig_feat.html
0ab2715152af916770bb14336927acf0 *help/assign-physeq.html
8242bf48e273c2a0468eb38e5b0dbc1b *help/assign-pred_matrix.html
2d57eefce5892a8de3ce5136ed08f0cf *help/assoc_param,siamcat-method.html
2d57eefce5892a8de3ce5136ed08f0cf *help/assoc_param-methods.html
2d57eefce5892a8de3ce5136ed08f0cf *help/assoc_param.html
2d57eefce5892a8de3ce5136ed08f0cf *help/assoc_param_param.html
d342017ae36921c3fe74f9fe352264d0 *help/associations,siamcat-method.html
d342017ae36921c3fe74f9fe352264d0 *help/associations-methods.html
d342017ae36921c3fe74f9fe352264d0 *help/associations.html
c545fac5e325708d6de8c132b0af5f04 *help/check.associations.html
4be3d7c2972e4a2fa56187fad26fbde3 *help/check.confounders.html
536a177e375f8913ded6adefcfe70b83 *help/create.data.split.html
d57793699dc2b230107c10484e1ac478 *help/create.label.html
90fa4ee491bc60343861dd9a98d78854 *help/data_split,siamcat-method.html
90fa4ee491bc60343861dd9a98d78854 *help/data_split-methods.html
90fa4ee491bc60343861dd9a98d78854 *help/data_split.html
157e363064b4caa53ef7f960dc2e477a *help/eval_data,siamcat-method.html
157e363064b4caa53ef7f960dc2e477a *help/eval_data-methods.html
157e363064b4caa53ef7f960dc2e477a *help/eval_data.html
cd43f1c8c30c44e33d66aefa3d4b01c5 *help/evaluate.predictions.html
8ec3eb573d026dc2b9798cb6a79eed5f *help/feat.crc.zeller.html
ca3fd0431167cf134c1adb4e0914d564 *help/feature_type,siamcat-method.html
ca3fd0431167cf134c1adb4e0914d564 *help/feature_type-methods.html
ca3fd0431167cf134c1adb4e0914d564 *help/feature_type.html
eb4db7c4c7b4ee99cedd903fc94b9431 *help/feature_weights,siamcat-method.html
eb4db7c4c7b4ee99cedd903fc94b9431 *help/feature_weights-methods.html
eb4db7c4c7b4ee99cedd903fc94b9431 *help/feature_weights.html
087e220cab54db6ee5921f45a05c332b *help/figures/BMBF.png
5d00ce4fd7a96ddbdf17cc79d02748a3 *help/figures/associations_plot.png
714a6d63f8f28e51ac5b7301f0639d08 *help/figures/denbi.png
3c48c17a9d7465e7dce629495aabcc72 *help/figures/embl_microbiome_tools_logo.png
4e88d1fd58f4a83e1ea074a6261ca9e9 *help/figures/interpretation_plot.png
1d9cd1df98bb30ed20190335225b1b59 *help/figures/logo.png
b08445731de325c1e986eba46e8eb36b *help/filt_feat,siamcat-method.html
b08445731de325c1e986eba46e8eb36b *help/filt_feat-methods.html
b08445731de325c1e986eba46e8eb36b *help/filt_feat.html
8e57510e8a5d418953e0710d902bbc35 *help/filt_params,siamcat-method.html
8e57510e8a5d418953e0710d902bbc35 *help/filt_params-methods.html
8e57510e8a5d418953e0710d902bbc35 *help/filt_params.html
399ba4784cc693fd00b0b23a492eaafe *help/filter.features.html
7b4b2ba729305a8c4accce74b6d9ab5b *help/filter.label.html
92d947ede8799371d317f71e101bc539 *help/get.component.classes.html
6e3678692fef6095a73d375d02318ff4 *help/get.filt_feat.matrix.html
2815e0fa2dbb7d52bb6d852fb0c52fdc *help/get.norm_feat.matrix.html
e99b9bb55fd5fd3f2a3201b9ccaef62c *help/get.orig_feat.matrix.html
d905553ab2526870b42385aaa1529da8 *help/label,siamcat-method.html
d905553ab2526870b42385aaa1529da8 *help/label-methods.html
d905553ab2526870b42385aaa1529da8 *help/label.html
a2351a17affff4bfb0954a8983320991 *help/make.predictions.html
8c64f855be6e723f27c277b977f9d3c3 *help/meta,sample_data-method.html
8c64f855be6e723f27c277b977f9d3c3 *help/meta,siamcat-method.html
8c64f855be6e723f27c277b977f9d3c3 *help/meta-methods.html
e314126915f0ee348600784518a758a7 *help/meta.crc.zeller.html
8c64f855be6e723f27c277b977f9d3c3 *help/meta.html
7d3c0a63d8ed3bf24beb9e748031cb67 *help/model.evaluation.plot.html
75085b47402e77caca654b047b84fcf1 *help/model.interpretation.plot.html
b20063dc1d358c88a243a89cf790f46a *help/model_list,siamcat-method.html
b20063dc1d358c88a243a89cf790f46a *help/model_list-methods.html
b20063dc1d358c88a243a89cf790f46a *help/model_list.html
f0dabcd16453858501b8a7c28f540ed1 *help/model_type,siamcat-method.html
f0dabcd16453858501b8a7c28f540ed1 *help/model_type-methods.html
f0dabcd16453858501b8a7c28f540ed1 *help/model_type.html
b486ecf01cdf3f67c73bb11fd8992f50 *help/models,siamcat-method.html
b486ecf01cdf3f67c73bb11fd8992f50 *help/models-methods.html
b486ecf01cdf3f67c73bb11fd8992f50 *help/models.html
fe415724d5a91c496a2ec48ecc32ec00 *help/norm_feat,siamcat-method.html
fe415724d5a91c496a2ec48ecc32ec00 *help/norm_feat-methods.html
fe415724d5a91c496a2ec48ecc32ec00 *help/norm_feat.html
bf8de718bdc2f80986d2b94467202f36 *help/norm_params,siamcat-method.html
bf8de718bdc2f80986d2b94467202f36 *help/norm_params-methods.html
bf8de718bdc2f80986d2b94467202f36 *help/norm_params.html
2e4e0be852ec9fef7d51cc38de8a710a *help/normalize.features.html
97c7bc9b9e75d4fd7d10e456c94046d8 *help/orig_feat,otu_table-method.html
97c7bc9b9e75d4fd7d10e456c94046d8 *help/orig_feat,siamcat-method.html
97c7bc9b9e75d4fd7d10e456c94046d8 *help/orig_feat-methods.html
97c7bc9b9e75d4fd7d10e456c94046d8 *help/orig_feat.html
22c2db8159af1201a4af3a9758cdec0c *help/parse.label.header.html
68c43ec1645852d9c7af485f1e762ced *help/paths.rds
4eceac4c79aa54bfac015f0f68893ae6 *help/physeq,ANY-method.html
4eceac4c79aa54bfac015f0f68893ae6 *help/physeq,phyloseq-method.html
4eceac4c79aa54bfac015f0f68893ae6 *help/physeq-methods.html
4eceac4c79aa54bfac015f0f68893ae6 *help/physeq.html
4daa6cd6d66d2f9ca71a62251ba2229d *help/pred_matrix,siamcat-method.html
4daa6cd6d66d2f9ca71a62251ba2229d *help/pred_matrix-methods.html
4daa6cd6d66d2f9ca71a62251ba2229d *help/pred_matrix.html
a159151d24c50370a9f58328fb2a9be5 *help/read.label.html
e689517ab1c54ff1a395b9d1adb2e23b *help/read.lefse.html
575430e726b4ec63d39ffe999d1999b6 *help/select.samples.html
2a304d01e83640e386e0e7182e3d094e *help/show,siamcat-method.html
2a304d01e83640e386e0e7182e3d094e *help/show-methods.html
e8e13336d31e566813b76a92cd64e86c *help/siamcat-class.html
de832cab376830b523f5becce51c35cb *help/siamcat.to.lefse.html
9cb44b5a25843eb587723ca1aaeb5485 *help/siamcat.to.maaslin.html
9881e9edcd4f82503f62b37d4eb64308 *help/siamcat_example.html
848404da9e7d043a5b25974704be1881 *help/summarize.features.html
11a2d38e8b5dc54aad1176f82102808f *help/train.model.html
69963985bdf095573d120f18345b65f7 *help/validate.data.html
e35b016cba773379a13a924f9f17ad78 *help/weight_matrix,siamcat-method.html
e35b016cba773379a13a924f9f17ad78 *help/weight_matrix-methods.html
e35b016cba773379a13a924f9f17ad78 *help/weight_matrix.html
bfc8305047bdef53cbff21b2532de3ec *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
635e45cbfaab0409c9d43ce5288557de *html/SIAMCAT-package.html
d7f09189516051e5bc8d5ec4d8eef232 *html/accessSlot.html
92371978bc61c5a2cd66d46858be273d *html/add.meta.pred.html
685ec96f2d406cf1ea74b9ed3cc3b4ba *html/assign-associations.html
fa1e8d3b6510d823db7f76acfbcaf67f *html/assign-data_split.html
1f7e10047320ffad971f387ae058c806 *html/assign-eval_data.html
ce06b7a2ca8b3a0063ddf7a4b70caf37 *html/assign-filt_feat.html
aecd23575b51c24050edf677d6018a9c *html/assign-label.html
6af5b11a9d9ae3fa06deccf1d66f4bf6 *html/assign-meta.html
08a148e84f7238c0c72874da2d8d3590 *html/assign-model_list.html
9f18512ffa79aa0a7ddefe17c480bef8 *html/assign-norm_feat.html
5b5e81c70e165feffbd175b9dc716b38 *html/assign-orig_feat.html
d2eda2d50d99006dbb71d68ad38e946a *html/assign-physeq.html
1bc61bcbc2250a33306dd8ac91c90c90 *html/assign-pred_matrix.html
987badaa0a57674d00b31c319496350e *html/assoc_param-methods.html
3292c9ccdbf4e84aec30c864acb17440 *html/associations-methods.html
60cb4ca45f7da3fd681760288e001f94 *html/check.associations.html
e1cd4020f16725e88a40cd6d1e80b1fb *html/check.confounders.html
9182e5f9b61498cb005a23325c6fd610 *html/create.data.split.html
7a11ced1e7cb1affc8b8e9984b58cf80 *html/create.label.html
6e536dbe2607f7e51d38bfaec36d07b5 *html/data_split-methods.html
a18733edd813666a0c33944fbf863495 *html/eval_data-methods.html
6d9a7d8e6a0b21936ffc74e6b1846426 *html/evaluate.predictions.html
0e841631377a89d69d59fc295ff362d7 *html/feat.crc.zeller.html
530668af91b8fa2ce4426d8ca9800330 *html/feature_type-methods.html
35e37f10f7f8053e7bbb1b7409bbf029 *html/feature_weights-methods.html
826311558350bac0b104594ff21f2d0e *html/filt_feat-methods.html
93fdc284c2a206130ce4334eb7739b61 *html/filt_params-methods.html
9782fb309de8770a8712266dd320b437 *html/filter.features.html
7cf3a0be300006a641579628b0fb6abc *html/filter.label.html
7d6864fb8d626dad0075a89297250305 *html/get.component.classes.html
081852a2903e22cb604b787248572b67 *html/get.filt_feat.matrix.html
b9926c55b0a4c457d776d96cde0c5ca6 *html/get.norm_feat.matrix.html
b8c5877acb849df21ead1aa2b2bad04e *html/get.orig_feat.matrix.html
2593dbec8ac5485c4fb8fb08657f95a6 *html/label-methods.html
510a3a4d30dfba1d197366230f885af5 *html/make.predictions.html
7a2aecff338bb48f894427992a22fd5c *html/meta-methods.html
3845c4caa80c7d6edb1efb0bc86fd5a5 *html/meta.crc.zeller.html
d2496b502cd1da76ea3e06ac9bc8bbe7 *html/model.evaluation.plot.html
d7969362c75542d8ede8f1ad84d8c5f6 *html/model.interpretation.plot.html
c42a86ca793cbac9e94ca8e71c1bdb0e *html/model_list-methods.html
0155e0f5355044a9053774910bd7f0fd *html/model_type-methods.html
f468c2d8aeaa9bac6b5a2d9b90be0155 *html/models-methods.html
029665100ac376456ded3ddefd341573 *html/norm_feat-methods.html
5e0f533c47e4ea6f8262669e030bde6f *html/norm_params-methods.html
3683417548a64a245f1ec0777322a103 *html/normalize.features.html
29cb341b8ba4062c04f32d9c8e971772 *html/orig_feat-methods.html
b772a114fc1780d44bf7d6497504de59 *html/parse.label.header.html
1831b22d8353842f5dba90c955d2d31e *html/physeq-methods.html
4a4c163e868a6f476e3b631852fad04c *html/pred_matrix-methods.html
abe1ddafc36f1b57295cca510d6b04a6 *html/read.label.html
80a07b186e576fd233c569232a6ead4e *html/read.lefse.html
c884189bb06a69e3b8cbd81122352aee *html/select.samples.html
7c7254b6323c44e4493b4ea7c7776230 *html/show-methods.html
84a4ead4e928d6d946dbb541d72fca4b *html/siamcat-class.html
58a01f637c867906ca664cbb4e5a9d7d *html/siamcat.html
a930e5df6cb7e5bc49f2ae5e75754985 *html/siamcat.to.lefse.html
681f28c3d74ae2fa6ef81ca6cbc2e9c1 *html/siamcat.to.maaslin.html
82432a3b2c18c15813beeadaaa404086 *html/siamcat_example.html
86764abbd2a5e88928829064fe4b9f70 *html/summarize.features.html
afbabc64a577c4f9b7f4f179bbfe2e6e *html/train.model.html
5f7413575f188e9a298b2cc23106283b *html/validate.data.html
6741b8f69d7aac3f7fba2b162df9b60b *html/weight_matrix-methods.html
bcb868a90f1a21d3ce3d95c10a2f7fdd *templates/footer.html
e51567d25a87ecf313943633f910a1e2 *templates/head.html
