# Generated by roxygen2: do not edit by hand

export(calcPresSpec)
export(checkInputValidity)
export(checkNewick)
export(checkOmaID)
export(clusterDataDend)
export(compareMedianTaxonGroups)
export(compareTaxonGroups)
export(createArchiPlot)
export(createGeneAgePlot)
export(createLongMatrix)
export(createPercentageDistributionData)
export(createProfileFromOma)
export(createRootedTree)
export(createVarDistPlot)
export(createVariableDistributionData)
export(createVariableDistributionDataSubset)
export(dataCustomizedPlot)
export(dataFeatureTaxGroup)
export(dataMainPlot)
export(dataVarDistTaxGroup)
export(estimateGeneAge)
export(fastaParser)
export(featureDistTaxPlot)
export(filterProfileData)
export(fromInputToProfile)
export(geneAgePlotDf)
export(generateSinglePlot)
export(getAllDomainsOma)
export(getAllFastaOma)
export(getCommonAncestor)
export(getCoreGene)
export(getDataClustering)
export(getDataForOneOma)
export(getDendrogram)
export(getDistanceMatrix)
export(getFastaFromFasInput)
export(getFastaFromFile)
export(getFastaFromFolder)
export(getIDsRank)
export(getInputTaxaID)
export(getInputTaxaName)
export(getNameList)
export(getOmaDataForOneOrtholog)
export(getOmaDomainFromURL)
export(getOmaMembers)
export(getQualColForVector)
export(getSelectedFastaOma)
export(getSelectedTaxonNames)
export(getTaxonomyInfo)
export(getTaxonomyMatrix)
export(getTaxonomyRanks)
export(gridArrangeSharedLegend)
export(heatmapPlotting)
export(highlightProfilePlot)
export(mainTaxonomyRank)
export(parseDomainInput)
export(parseInfoProfile)
export(processNcbiTaxonomy)
export(reduceProfile)
export(runPhyloProfile)
export(sortInputTaxa)
export(sortTaxaFromTree)
export(taxonomyTableCreator)
export(varDistTaxPlot)
export(wideToLong)
export(xmlParser)
import(BiocStyle)
import(DT)
import(ExperimentHub)
import(RColorBrewer)
import(RCurl, except = reset)
import(data.table)
import(energy)
import(ggplot2)
import(gridExtra)
import(shinyBS)
import(shinyjs, except = colourInput)
importFrom(Biostrings,readAAStringSet)
importFrom(ape,as.phylo)
importFrom(ape,root)
importFrom(bioDist,cor.dist)
importFrom(bioDist,mutualInfo)
importFrom(colourpicker,colourInput)
importFrom(gridExtra,arrangeGrob)
importFrom(xml2,read_xml)
importFrom(xml2,xml_attr)
importFrom(xml2,xml_find_all)
