annotateORFs            Annotate open reading frames
classifyORFsCandidates
                        Classify the pseudo and true ORF candidates
                        derived from RNA molecules
codonStartStop          Identify all potential start and stop codons in
                        a nucleotide sequence
findORFs                Identify all variants of open reading frames in
                        a nucleotide sequence
findPTCs                Identify the premature termination codons in
                        nucleotide sequences
getSeqORFs              Extract the sequences of identified open
                        reading frames
loadTrExper             Load a set of transcripts
predictORF              Predict the true ORFs in mRNA molecules
translateORFs           Translate open reading frames to proteins
vectorizeORFs           Vectorize the ORF(-s) sequence(-s) to sequence
                        features
