getPhyloTreePatient {MesKit}R Documentation

getPhyloTreePatient

Description

getPhyloTreePatient

Usage

getPhyloTreePatient(object)

## S4 method for signature 'phyloTree'
getPhyloTreePatient(object)

Arguments

object

An object of phyloTree

Value

patientID of phyloTree

Examples

maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
phyloTree <- getPhyloTree(maf)
getPhyloTreePatient(phyloTree$V402)
[Package MesKit version 1.2.0 Index]