R: getMafData

getMafData {MesKit}

R Documentation

getMafData

Description

getMafData

Usage

getMafData(object)

## S4 method for signature 'Maf'
getMafData(object)

Arguments

object

An object of Maf

Value

Maf data

Examples

maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getMafData(maf$V402)

[Package MesKit version 1.2.0 Index]