# Generated by roxygen2: do not edit by hand

S3method(countsTable,MIMOSAResultList)
S3method(fdr,MIMOSAResult)
S3method(fdr,MIMOSAResultList)
S3method(fdr,matrix)
S3method(getW,MIMOSAResult)
S3method(getW,MIMOSAResultList)
S3method(getZ,MIMOSAResult)
S3method(getZ,MIMOSAResultList)
S3method(volcanoPlot,MIMOSAResultList)
export(ConstructMIMOSAExpressionSet)
export(MIMOSA)
export(MIMOSAExpressionSet)
export(asinh_trans)
export(boxplotMIMOSAResultList)
export(combine.MIMOSA)
export(countsTable)
export(fdr)
export(getPosteriorResponseRate)
export(getW)
export(getZ)
export(volcanoPlot)
exportMethods("pData<-")
exportMethods(countsTable)
exportMethods(pData)
import(Formula)
import(scales)
import(tidyr)
importClassesFrom(methods,array)
importClassesFrom(methods,character)
importClassesFrom(methods,data.frame)
importClassesFrom(methods,factor)
importClassesFrom(methods,integer)
importClassesFrom(methods,matrix)
importClassesFrom(methods,numeric)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,`pData<-`)
importFrom(MASS,ginv)
importFrom(MASS,huber)
importFrom(MCMCpack,rdirichlet)
importFrom(Rcpp,evalCpp)
importFrom(coda,mcmc)
importFrom(data.table,data.table)
importFrom(data.table,key)
importFrom(data.table,rbindlist)
importFrom(data.table,setnames)
importFrom(dplyr,`%>%`)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,group_by)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_trans)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme_bw)
importFrom(grDevices,gray.colors)
importFrom(graphics,contour)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,title)
importFrom(methods,callNextMethod)
importFrom(methods,new)
importFrom(methods,show)
importFrom(modeest,mlv)
importFrom(plyr,ddply)
importFrom(plyr,is.formula)
importFrom(plyr,ldply)
importFrom(pracma,grad)
importFrom(pracma,hessian)
importFrom(reshape,cast)
importFrom(reshape,melt)
importFrom(reshape,rename)
importFrom(rlang,.data)
importFrom(rlang,`!!`)
importFrom(rlang,enquo)
importFrom(stats,as.formula)
importFrom(stats,dbeta)
importFrom(stats,dexp)
importFrom(stats,ecdf)
importFrom(stats,fisher.test)
importFrom(stats,model.frame)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pbeta)
importFrom(stats,qbeta)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,rmultinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,terms)
importFrom(stats,var)
importFrom(testthat,context)
importFrom(testthat,expect_that)
importFrom(testthat,test_dir)
importFrom(utils,globalVariables)
importFrom(utils,read.table)
importMethodsFrom(Biobase,pData)
useDynLib(MIMOSA, .registration=TRUE)
