R: Filter out outliers in metadata, identified by the chosen...

outlier_filter {ISAnalytics}

R Documentation

Filter out outliers in metadata, identified by the chosen outlier test.

Description

Filter out outliers in metadata.

Usage

outlier_filter(
  metadata,
  outlier_test = "outliers_by_pool_fragments",
  negate = FALSE,
  ...
)

Arguments

`metadata`	The metadata data frame
`outlier_test`	A string representing a function name. The name must be one of the available outlier tests, see available_outlier_tests.
`negate`	If TRUE will return only the metadata that was flagged to be removed. If FALSE will return only the metadata that wasn't flagged to be removed.
`...`	Additional named arguments passed to `outliers_test`

Value

A data frame of metadata which has less or the same amount of rows

Examples

op <- options(ISAnalytics.widgets = FALSE)

path_AF <- system.file("extdata", "ex_association_file.tsv",
    package = "ISAnalytics"
)
association_file <- import_association_file(path_AF, root = NULL,
    dates_format = "dmy"
)
filtered_af <- outlier_filter(association_file, key = "VCN")
options(op)

[Package ISAnalytics version 1.2.1 Index]