readPKCFile {GeomxTools}R Documentation

Read PKC File

Description

Read a NanoString Probe Kit Configuration (PKC) file.

Usage

readPKCFile(file)

Arguments

file

A character string containing the path to the PKC file.

Value

An instance of the DataFrame class containing columns:

"RTS_ID"

unique probe ID

"Gene"

gene name

"Module"

PKC name

"Negative"

negative probe

...

additional columns

Author(s)

Zhi Yang & Nicole Ortogero

See Also

readNanoStringGeomxSet

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
pkc <- unzip(zipfile = file.path(datadir,  "/pkcs.zip"))
PKCData <- readPKCFile(pkc)
[Package GeomxTools version 1.0.0 Index]