dfb5ee9aaad8895a692da0f391aacb36 *DESCRIPTION
36e9cdb7b00a09aff787028035da87e8 *INDEX
aab1a1a690350b2cafe0aa22ee226218 *LICENSE
089d3bd245ac0fc06ea86a60c2e15b1f *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
e27885e21a87b84e7ab47a448257b27d *Meta/hsearch.rds
2d3d89ab7af3be0bf6631b432a713a94 *Meta/links.rds
4898072e451209fd177dc8c0f42f04cc *Meta/nsInfo.rds
c40382c9739a9a7f5fe9417e7b849b64 *Meta/package.rds
e543804bc9fdc8926514f657a90dc5f3 *Meta/vignette.rds
168ebfab71a76fab29dffd78ae64b4b7 *NAMESPACE
e5b46e94fec5fe30da73f727cf97644e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GeneStructureTools
5070fef0c5ed92243439383161243d0f *R/GeneStructureTools.rdb
5c8e3456b6c72545ef084cdfa7dbd90c *R/GeneStructureTools.rdx
68c89b782ef6faea31d18e6081cf32b8 *doc/Vignette.R
a986096c2549236e38c331c1eb88d14f *doc/Vignette.Rmd
24fe38902404cdd602890dabf2adeb49 *doc/Vignette.html
542839b3e9e3893d67c2321bebd1b96d *doc/index.html
a9ba88162c20eddfc11c351d92fdcd09 *extdata/dexseq_process.R
96640b2e1735a4a23445a79154a89427 *extdata/dexseq_results_significant.txt
21a6c46d6193261e7bbcf4c7e1849f61 *extdata/example_gtf.gtf
c500de5992f92ebc83581899338c6d87 *extdata/gencode.vM14.dexseq.gtf
b28e8fedfee20f988113945166d52e0d *extdata/leafcutter/per_intron_results.tab
962287f8f3daaaae762c5f2eb8ab6267 *extdata/leafviz2table.R
d340f2509b1c4e1ccc74ed9e3b7799a0 *extdata/whippet/01_v_21.diff.gz
a751ff8f2e7f44be9fafbcedf6380afc *extdata/whippet/A01.jnc.gz
14fc894210fd1272e528613d72c5827b *extdata/whippet/A01.psi.gz
4bb796ee52ba3c7bff0733fd152de391 *extdata/whippet/A21.jnc.gz
bab86c79e977dd697ad0fdf037e2575d *extdata/whippet/A21.psi.gz
a64605c248ed60f04f1d5dfc334f181d *extdata/whippet/B01.jnc.gz
44c88c32417f2146e5e1a394243531be *extdata/whippet/B01.psi.gz
1210ab94aae2149703812243434a9883 *extdata/whippet/B21.jnc.gz
63b0451eca429697512091dbe65874cc *extdata/whippet/B21.psi.gz
f0e50ed69a8762a0c858c1b759ec7294 *help/AnIndex
db86123b263c3d60ff99d0659de14ff3 *help/DEXSeqIdsToGeneIds.html
abee5a4a5ef99ba1a8ab46f7e42070cd *help/GeneStructureTools.rdb
fba520f1f88ee01430da6b8b57da223f *help/GeneStructureTools.rdx
2e76f4c2792c16dc44b35ff60d561ee6 *help/UTR2UTR53.html
04e8f7d5d0ae8530f419cfe940c06571 *help/addBroadTypes.html
9c0ee8bcc4bc40979d6da40c0d999080 *help/addIntronInTranscript.html
4703d850b5f9d6d33e12b3210be77d3e *help/addSets.html
885b43327f1b32c51d5e094940743bb0 *help/aliases.rds
a61f233cd654016cea0765443477f1f0 *help/alternativeIntronUsage.html
e43d6376e8e6bac66eabfc2202d0edf5 *help/annotateGeneModel.html
c1649478ae9ef02d1eccff990d5aa408 *help/attrChangeAltSpliced.html
8d401b7b65dba606bcebc72bf136115d *help/coordinates,whippetDataSet-method.html
8d401b7b65dba606bcebc72bf136115d *help/coordinates-methods.html
8d401b7b65dba606bcebc72bf136115d *help/coordinates.html
575dc130eb3ea7384b1fde9e81238169 *help/cumsumANDpad.html
7301dbf1fdc2ef92b6c30271f1a6843d *help/diffSplicingResults,whippetDataSet-method.html
7301dbf1fdc2ef92b6c30271f1a6843d *help/diffSplicingResults-methods.html
7301dbf1fdc2ef92b6c30271f1a6843d *help/diffSplicingResults.html
9de62c5271bd36ea1158e9b107628e57 *help/exonsToTranscripts.html
87dc5d088a5a1b6edf7be06b27836aff *help/filterGtfOverlap.html
96ee311d7498eec0b748b4b91d86cc91 *help/filterWhippetEvents.html
236ea8e58b9f7d05c3742ef493c8e540 *help/findDEXexonType.html
35d155de5db022290a5086bc2ba41693 *help/findExonContainingTranscripts.html
a366dd435bcca60848ce8424d7abd0d2 *help/findIntronContainingTranscripts.html
70baef910a05019bebb522dc393690a1 *help/findJunctionPairs.html
1e167dc5a3d78506b8da2aea1b36e453 *help/formatWhippetEvents.html
3f100a3b4ecb07b80d6bedeae0d13d6d *help/getOrfs.html
e6815f6d3d4520356f88bff388acf51b *help/getUOrfs.html
3debbd206078eba21c98a399542ea7a7 *help/junctions,whippetDataSet-method.html
3debbd206078eba21c98a399542ea7a7 *help/junctions-methods.html
3debbd206078eba21c98a399542ea7a7 *help/junctions.html
e448c5ac9273dee42289366d9db6cb61 *help/leafcutterTranscriptChangeSummary.html
dfc837740c7421f0e4efc2f9da55b85e *help/makeGeneModel.html
6b8fd5244bddd0723bd647870f2998be *help/maxLocation.html
1006dd8227662b7bb8d3b1c6d4828e2b *help/orfDiff.html
853d778fdbddb72babe5b08260342ed3 *help/orfSimilarity.html
21d2feea0c2e10967af054f436048f29 *help/overlapTypes.html
588019409f4579024487c922f63399bb *help/paths.rds
2d023652e127f05793b0b0c9bdbee5e8 *help/readCounts,whippetDataSet-method.html
2d023652e127f05793b0b0c9bdbee5e8 *help/readCounts-methods.html
2d023652e127f05793b0b0c9bdbee5e8 *help/readCounts.html
01d36459123c0907e9e7456de8776323 *help/readWhippetDIFFfiles.html
19b4a3660eacf4e223d552b2bafba33d *help/readWhippetDataSet.html
39680924bd612aaa1da4176601d142e1 *help/readWhippetJNCfiles.html
b1cedda8d1af19d953f78ba94e56e8b1 *help/readWhippetPSIfiles.html
b5fffa31b355918457dc2e652bed56c7 *help/removeDuplicateTranscripts.html
8ae1c12826c199af14a8fa6c95599d93 *help/removeSameExon.html
228b1076b9383f5972b836d59d2bcf76 *help/removeVersion.html
92c254e588f34ea7ca883554a5608b53 *help/reorderExonNumbers.html
f199f9b0d3338f29409b19e65ee34551 *help/replaceJunction.html
2800dc0b10034f2b08dd1f29f0668e73 *help/skipExonInTranscript.html
0bad344bf637a3fda1b7cd4d835754d7 *help/summariseExonTypes.html
5da0b9caf7bb33ebd1ec95f1a833a60c *help/transcriptChangeSummary.html
72ef46d54915a3b103252e171b8c1ac3 *help/whippetDataSet-class.html
c06391da4f9a6f05ff3af7f11b280385 *help/whippetTranscriptChangeSummary.html
090ea70fb270416ea993ec59793ec67d *html/00Index.html
c4574c77ac09b250a8f05e770f8bcfe5 *html/DEXSeqIdsToGeneIds.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
94ed44dbdd3f8a02adefbbc2fa1b30d7 *html/UTR2UTR53.html
3cec1c65a70cb40dc8757a1a9007f600 *html/addBroadTypes.html
14064ca4bb555c16812be2ee4b5cc124 *html/addIntronInTranscript.html
b1e49c1fae1ea0dc49a32817aff1ac54 *html/addSets.html
bd7df8d700cad91aca9cb91e9ee55201 *html/alternativeIntronUsage.html
f8f3aacecd823c15ea9f6979c320abce *html/annotateGeneModel.html
9e86eaca448358a11c83a6323392a7a1 *html/attrChangeAltSpliced.html
0b9b6c72b0d548fd20d92708d0a694b5 *html/coordinates-methods.html
1d91d38fcc017e200b8bffc54092deb1 *html/cumsumANDpad.html
c8d6fe069835a3595b34f1f0aa5c3723 *html/diffSplicingResults-methods.html
68faa246fedc5885aa42b7fd3245672c *html/exonsToTranscripts.html
0813c57b7fe7027b5357bba74f982933 *html/filterGtfOverlap.html
f8473ddf53a0c2e40b8902551875a0da *html/filterWhippetEvents.html
9b40d0d7878c6deeca06f43d03d6e3f1 *html/findDEXexonType.html
d460627addd9136ba14db7ff002e8ef1 *html/findExonContainingTranscripts.html
a47d76b992f59217341cddd3b7e619e0 *html/findIntronContainingTranscripts.html
e942f15f86e035b26c341225da16ae51 *html/findJunctionPairs.html
8d2d74a5da07b4d85e6edbd5ecc0702e *html/formatWhippetEvents.html
279b1024d380a7925cd6892e4e8f7444 *html/getOrfs.html
d4cc9ba1d30f93a9059874f4223f83fc *html/getUOrfs.html
59b907cb1c26cc3d9b72d9eb52725ac2 *html/junctions-methods.html
debd9ebeb6715af9c0a198b49cda7de9 *html/leafcutterTranscriptChangeSummary.html
ef01f4d49c556f3e9d6a2aacab63b147 *html/makeGeneModel.html
c1f1a1fe6c5bf9160355e1e576f93b04 *html/maxLocation.html
563e9dde06f7a102ffaab4ece664a84e *html/orfDiff.html
2d47893f1d0218639f17c31016b0b368 *html/orfSimilarity.html
640b6066f28a8ddde02a604da9cfccf2 *html/overlapTypes.html
fc964f320ffdd4b95ff5d057b49df8bc *html/readCounts-methods.html
9909ced36afffe5f38be9725af948f9c *html/readWhippetDIFFfiles.html
69424e1a508b41558c7b0264a1f89b60 *html/readWhippetDataSet.html
d5c268095146c80d2fb5b99d87d97920 *html/readWhippetJNCfiles.html
636b5a671b6ddf1f83ae92fb5b97a5ba *html/readWhippetPSIfiles.html
95d461a7653e9ad7da0c5d8d3709403f *html/removeDuplicateTranscripts.html
cdf9fe9d6ef214e5f5010e1b61cf0860 *html/removeSameExon.html
edf1c96cb20fbee7c1037df538a2a102 *html/removeVersion.html
ba3def882fb6495eeee7eb47a2294b93 *html/reorderExonNumbers.html
bd9531fc1e480f932f66724af64f2572 *html/replaceJunction.html
b77a1e755d3d71b6c245c33da282e9d4 *html/skipExonInTranscript.html
3b412b7798d71ac4f804e1feff13991e *html/summariseExonTypes.html
e3eebae310d346ab558f163a93b53ae6 *html/transcriptChangeSummary.html
c0acd5347281ee32a7272fd2d55b53d1 *html/whippetDataSet-class.html
a3aba6e848d17b5518412ebff2daef4b *html/whippetTranscriptChangeSummary.html
