GetMetaclusterCVs

Description

Compute the coefficient of variation for the metaclusters

Usage

GetMetaclusterCVs(fsom)

Arguments

Value

Metacluster CVs

Examples

fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff, flowCore::keyword(ff)[["SPILL"]])
ff <- flowCore::transform(ff,
         flowCore::transformList(colnames(flowCore::keyword(ff)[["SPILL"]]),
                                flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,
                       scale = TRUE,
                       colsToUse = c(9, 12, 14:18), 
                       nClus = 10)
cvs <- GetMetaclusterCVs(flowSOM.res)