AssaySubset             AssaySubset constructor
AssaySubset-class       An S4 class to manage subset representation.
ExperimentSubset        ExperimentSubset constructor
SubsetRangedSummarizedExperiment-class
                        An S4 class for 'RangedSummarizedExperiment'
                        objects with added support for subsets.
SubsetSingleCellExperiment-class
                        An S4 class for 'SingleCellExperiment' objects
                        with added support for subsets.
SubsetSpatialExperiment-class
                        An S4 class for 'SpatialExperiment' objects
                        with added support for subsets.
SubsetSummarizedExperiment-class
                        An S4 class for 'SummarizedExperiment' objects
                        with added support for subsets.
SubsetTreeSummarizedExperiment-class
                        An S4 class for 'TreeSummarizedExperiment'
                        objects with added support for subsets.
createSubset            Subset creation method for ExperimentSubset
                        objects
getSubsetAssay          Get subset assay from an 'ExperimentSubset'
                        object.
reducedDimNames         reducedDimNames
reducedDimNames<-       reducedDimNames<-
reducedDims<-           reducedDims<-
reducedDims<-,ANY-method
                        reducedDims<-
setSubsetAssay          Method for storing new assays inside subsets in
                        ExperimentSubset objects
subsetAssayCount        Count method for subset assays in
                        ExperimentSubset objects
subsetAssayNames        Name retrieval method for all subset assays in
                        ExperimentSubset objects
subsetColData           Accessor method for colData from subsets in
                        ExperimentSubset objects
subsetColLinks          Accessor method for colLinks from subsets in
                        ExperimentSubset objects
subsetColnames          subsetColnames
subsetCount             Subset count method for ExperimentSubset
                        objects
subsetDim               Get dimensions of subsets in ExperimentSubset
                        objects
subsetNames             Get names of only the subsets in
                        ExperimentSubset objects
subsetParent            Subset parent hierarchy retrieval method for
                        ExperimentSubset objects
subsetRowData           Accessor method for rowData from subsets in
                        ExperimentSubset objects
subsetRowLinks          Accessor method for rowLinks from subsets in
                        ExperimentSubset objects
subsetRownames          subsetRownames
subsetSpatialCoords     Accessor method for spatialCoords from subsets
                        in ExperimentSubset objects
subsetSpatialData       Accessor method for spatialData from subsets in
                        ExperimentSubset objects
subsetSummary           Method for displaying 'child-parent' link
                        structure of subsets in ExperimentSubset
                        objects
