9894cfa4b37fdabaabcf746988946122 *CITATION
13857304bb8b6fda8afdbc78630ca21e *DESCRIPTION
2550fef3815f0ed2758cce10cd92f38f *INDEX
04b2628b86fc2b7610b2823200f4761e *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
ca0038b166ae43cb4e20ea0813a56fb6 *Meta/hsearch.rds
6699512c68c950624c03716cd12109bf *Meta/links.rds
e4e29dd67f9d77f735472c0bfbcced92 *Meta/nsInfo.rds
7fd7f3fcfa89eef3d8ddcc747b453f5a *Meta/package.rds
f42acfe89b99dff57d5846b1f422ede3 *Meta/vignette.rds
7a63ea4edde57d06c6d849c1fca945e3 *NAMESPACE
f578aa85440df795106d4c90fe099221 *NEWS.html
7e713824e94603b38b0069bfa72b33cb *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/DMCHMM
83915bf6fba38a48c8c4beaa57249363 *R/DMCHMM.rdb
b3421526bd19729e9460e137b665d1b6 *R/DMCHMM.rdx
9e45d099aaec0871ac7185a4ed6ea176 *doc/DMCHMM.R
9f6bd1be54a41eaf79c4aa898e91fdca *doc/DMCHMM.Rmd
2c69bd610f2b50b01d519b1766ba1d0c *doc/DMCHMM.html
83e29c63872c83fe9fd6e502191af497 *doc/index.html
e4a8d10792d871f359df10f12ede32a5 *extdata/blk.BCU1568_BC_BS_1
69b3365531214cb5f7422a7409a8a3f3 *extdata/blk.BCU173_TC_BS_1
e7b35ffb5644a50e3bcc1b48673b031a *extdata/blk.BCU551_Mono_BS_1
656e249314f260e0becd45581f9b5cb6 *help/AnIndex
9c6ec3aade24c43fefdae7c106c883c6 *help/BSDMCs-class.html
9c6ec3aade24c43fefdae7c106c883c6 *help/BSDMCs.html
02d24f80eb92bbcf3a5c50d023fa2a09 *help/BSData-class.html
02d24f80eb92bbcf3a5c50d023fa2a09 *help/BSData.html
fc2f733cd05a67bf4396e933c1264631 *help/DMCHMM-package.html
fc2f733cd05a67bf4396e933c1264631 *help/DMCHMM.html
ebc9aeab39927c786d19cd2d938b96ea *help/DMCHMM.rdb
0bdb1b688e7b18761a86c08e1c1fd342 *help/DMCHMM.rdx
a7e6e486b0c798b4901efb46d2a5a57f *help/aliases.rds
56cd1e02b0062890b0e0bce89bcd2ffd *help/cBSDMCs,matrix,matrix,matrix,matrix,matrix,GRanges-method.html
56cd1e02b0062890b0e0bce89bcd2ffd *help/cBSDMCs-method.html
56cd1e02b0062890b0e0bce89bcd2ffd *help/cBSDMCs.html
a81f25ad548af244e39b83caff956d51 *help/cBSData,matrix,matrix,GRanges-method.html
a81f25ad548af244e39b83caff956d51 *help/cBSData-method.html
a81f25ad548af244e39b83caff956d51 *help/cBSData.html
a4cce2dd27aaa548912a9542711a60b0 *help/combine,BSDMCs,BSDMCs-method.html
a4cce2dd27aaa548912a9542711a60b0 *help/combine,BSData,BSData-method.html
a4cce2dd27aaa548912a9542711a60b0 *help/combine-method.html
a4cce2dd27aaa548912a9542711a60b0 *help/combine.html
7c51e96bf9b6376e3c8cc2c6a03a532e *help/data.html
b5fbdee9d7419499397f089ef5a87075 *help/findDMCs,BSDMCs-method.html
b5fbdee9d7419499397f089ef5a87075 *help/findDMCs-method.html
b5fbdee9d7419499397f089ef5a87075 *help/findDMCs.html
f95c1595419a3c4b6344c1e70006520d *help/manhattanDMCs,BSDMCs-method.html
f95c1595419a3c4b6344c1e70006520d *help/manhattanDMCs-method.html
f95c1595419a3c4b6344c1e70006520d *help/manhattanDMCs.html
526fb701c8c5c1e7611a0345ff39e235 *help/methHMEM,BSData-method.html
526fb701c8c5c1e7611a0345ff39e235 *help/methHMEM-method.html
526fb701c8c5c1e7611a0345ff39e235 *help/methHMEM.html
e1541ddd50d09c4cd39faf4fea373b1a *help/methHMMCMC,BSDMCs-method.html
e1541ddd50d09c4cd39faf4fea373b1a *help/methHMMCMC-method.html
e1541ddd50d09c4cd39faf4fea373b1a *help/methHMMCMC.html
0afc2be691090d19be446ebede86bbcb *help/methLevels,BSDMCs-method.html
0afc2be691090d19be446ebede86bbcb *help/methLevels-method.html
0afc2be691090d19be446ebede86bbcb *help/methLevels.html
7e1b7460bfcae601ad8ce18ea95bdc02 *help/methReads,BSDMCs-method.html
7e1b7460bfcae601ad8ce18ea95bdc02 *help/methReads,BSData-method.html
7e1b7460bfcae601ad8ce18ea95bdc02 *help/methReads-method.html
7e1b7460bfcae601ad8ce18ea95bdc02 *help/methReads.html
3239a5f3b361bb1b44f15bee4fb38618 *help/methStates,BSDMCs-method.html
3239a5f3b361bb1b44f15bee4fb38618 *help/methStates-method.html
3239a5f3b361bb1b44f15bee4fb38618 *help/methStates.html
a35ff2807ab9a65ab2f5e5e79b467e3f *help/methVars,BSDMCs-method.html
a35ff2807ab9a65ab2f5e5e79b467e3f *help/methVars-method.html
a35ff2807ab9a65ab2f5e5e79b467e3f *help/methVars.html
c0df2a823017baed0a5379d5a95be220 *help/params.html
f2d28f14076abbba9a90eca09b667986 *help/paths.rds
2d54c63153b51a204ef1e61f520d435e *help/qqDMCs,BSDMCs-method.html
2d54c63153b51a204ef1e61f520d435e *help/qqDMCs-method.html
2d54c63153b51a204ef1e61f520d435e *help/qqDMCs.html
cf184ff6cd60e07c1a240dc026643e1e *help/readBismark,character,DataFrame,numeric-method.html
cf184ff6cd60e07c1a240dc026643e1e *help/readBismark,character,character,numeric-method.html
cf184ff6cd60e07c1a240dc026643e1e *help/readBismark,character,data.frame,numeric-method.html
cf184ff6cd60e07c1a240dc026643e1e *help/readBismark-method.html
cf184ff6cd60e07c1a240dc026643e1e *help/readBismark.html
124a11b3e5d16deec379148f1a6ba619 *help/totalReads,BSDMCs-method.html
124a11b3e5d16deec379148f1a6ba619 *help/totalReads,BSData-method.html
124a11b3e5d16deec379148f1a6ba619 *help/totalReads-method.html
124a11b3e5d16deec379148f1a6ba619 *help/totalReads.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSDMCs,character,character-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSDMCs,character,missing-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSDMCs,missing,character-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSDMCs,missing,missing-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSData,character,character-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSData,character,missing-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSData,missing,character-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED,BSData,missing,missing-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED-method.html
05293c97030b19e7070965a3c533be9b *help/writeBED.html
07511b40156e3f2128693cc09a38496a *html/00Index.html
2919e13914161fea55a7ff9c4fa48b89 *html/BSDMCs-class.html
bd5877f420c4cfbe58b4add0cdd3ed1e *html/BSData-class.html
eb71e33cc9978f0495ab233e4ac1f2d2 *html/DMCHMM-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
50057456be2f9306f0e898a20374c561 *html/cBSDMCs-method.html
aabf5b944061603a2f91ab9918a5b97f *html/cBSData-method.html
4f772c1933c7c0fc30e6ad7f373c5b3d *html/combine-method.html
567b7defee6be2d75c67993662bc47fa *html/data.html
69db3928cf5582a73f6bf1d737405df7 *html/findDMCs-method.html
71682449bc4a6d8559092fa04c190259 *html/manhattanDMCs-method.html
8254630c87552fbed1de397a0aa8d0fa *html/methHMEM-method.html
366ced27272bd8455714f7eb51101182 *html/methHMMCMC-method.html
e3a0e381d74955972d287c7daf26fab3 *html/methLevels-method.html
d36054eb705bc85d48cce1a56e9b603c *html/methReads-method.html
3504870f2da67d21c49c77f23b700d06 *html/methStates-method.html
1112107794f75ae8e586bb91c6981273 *html/methVars-method.html
aa9476a510edfbbaee7e66d23deb6ca4 *html/params.html
b8682c6648b0dba6462167c7bad22481 *html/qqDMCs-method.html
aa2e06a6400fee579e67f8e8d6e9ceed *html/readBismark-method.html
85b9684ecf68c89c405dbc01470d0616 *html/totalReads-method.html
da63f16548ca0fae027f98e1880cf717 *html/writeBED-method.html
