1c126cf317795c2868ecb1cb998d2361 *CITATION
ec310f532255665b33dcc41226607131 *DESCRIPTION
832b4fa02a388ec6a13e2d90cf6cbb8e *INDEX
fc5aea5252f36eac12f19b686dbac125 *Meta/Rd.rds
c5ad9cdc3240b28782c31a1d11e0eb16 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
c45710ed4972f4fcc19a46450aa7e9ac *Meta/hsearch.rds
6039c545bf7771a2a4615e8b44b2fe08 *Meta/links.rds
ed8676ea7a23ccf49f09606281bdfec9 *Meta/nsInfo.rds
73e44c924e1b5dd50c843323901c25f9 *Meta/package.rds
8eb2b510abd6242be240f1b1938d44a4 *Meta/vignette.rds
9688f51dd5ae0858f4135f4fcc6c565f *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/DECIPHER
28dc8ba047cbb0db715ad01c51876962 *R/DECIPHER.rdb
2564517049502000f3742ab93c652748 *R/DECIPHER.rdx
b0394a45a792ab6481f252043df472f0 *data/HEC_MI1.RData
c612acc7a076726e64c963e803cee299 *data/HEC_MI2.RData
17802c66d55206d32a7f45eb3f99d831 *data/MIQS.RData
cf2ae80d934092690ef8118bbae81d1d *data/NonCodingRNA_Archaea.RData
959b1a4194c29eaa5a4c4335d544c19f *data/NonCodingRNA_Bacteria.RData
f6338b384ea14691d3257fdaab5830ff *data/NonCodingRNA_Eukarya.RData
728f0db5d197397f91bc938f1bb5ed66 *data/PFASUM.RData
f4db1b0f3bdb5a54a194bdc4719d950e *data/RESTRICTION_ENZYMES.RData
eefa4385d7a969d3d14819ce8c9600b1 *data/TrainingSet_16S.RData
35805b36bee328ff7a2ddc26ffc3b5a3 *data/datalist
b91a47bd980e654a04cc2d2b192fa062 *data/deltaGrules.RData
b81ce9424bcb784163713f3dc53f96ce *data/deltaHrules.RData
5f9e765494c41f88a5590ad8634a65ab *data/deltaHrulesRNA.RData
0d5fba715a2586bf9e7d88f3842cb825 *data/deltaSrules.RData
8b0ed7f4e384cde23de13faf5806c0eb *data/deltaSrulesRNA.RData
608a167f80a73712de8287a09b5cfaff *doc/ArtOfAlignmentInR.R
f44d21551a049dee476bba17726b9923 *doc/ArtOfAlignmentInR.Rnw
0a6bdb0898aa49103c1df3a31ec9cef1 *doc/ArtOfAlignmentInR.pdf
c0106fa879d89e91950a38451b326cbb *doc/ClassifySequences.R
199138cdbb819891ac67769147c0143f *doc/ClassifySequences.Rnw
91660a12f14d3141268066b3a3de2fb1 *doc/ClassifySequences.pdf
1ed218c292b08dcbad2fa62884df1679 *doc/DECIPHERing.R
3440ded30ad6a8128ceacf52deb1b394 *doc/DECIPHERing.Rnw
1400a7f3bb31fc4cfbca74ac5d4b3fe9 *doc/DECIPHERing.pdf
935e66698b65059a1b7ba18463d9128a *doc/DesignMicroarray.R
710f7ae23728043473f7a07c71a5725b *doc/DesignMicroarray.Rnw
351ca5c533e41d271336afaddb1c6a40 *doc/DesignMicroarray.pdf
0f7ca9d0a085d139b4e2aed4551201c3 *doc/DesignPrimers.R
987f6a0c6d700838d5030876b6d90a32 *doc/DesignPrimers.Rnw
b9c7d2a554408c4f50aa9d7a7924475d *doc/DesignPrimers.pdf
885dddf33a146b9f01d40baf618f36ed *doc/DesignProbes.R
e8add8b777c2590335b78099a5a02adc *doc/DesignProbes.Rnw
82813f5bc7fda8d6ce3462726dac03f7 *doc/DesignProbes.pdf
40e0f20c62fa8d63fbb0d1a64a1bb2c3 *doc/DesignSignatures.R
ef0559b065fd92b00bb38efaf084f6c1 *doc/DesignSignatures.Rnw
734d7dc733879bd557798f5639d92e8c *doc/DesignSignatures.pdf
306f25ccc844baf9a60a3a4aca3bcdd0 *doc/FindChimeras.R
eb137ce586a14b9f226789ecc06de816 *doc/FindChimeras.Rnw
8f730040bfde81f74318581af5d6b071 *doc/FindChimeras.pdf
16ea3166e553002eb2645017c86b6ab4 *doc/FindingGenes.R
9ac6f6bb892ffb15ee0157ace25e4b24 *doc/FindingGenes.Rnw
e2b31f48f91e5be5a26d14d96201f22b *doc/FindingGenes.pdf
3c5de8bb3dd0e9bd2a50873dfc2bc7a1 *doc/FindingNonCodingRNAs.R
33034b56d0a1ec714e254a7b115799b2 *doc/FindingNonCodingRNAs.Rnw
b178fac5bd49197ff095142c6ed87621 *doc/FindingNonCodingRNAs.pdf
48130f2963ea484fac8a93673a829dd1 *doc/index.html
77c78cc47693d6e055a0ffdace7b1f43 *extdata/50S_ribosomal_protein_L2.fas
22e6f12c17f3f2a69540800dd21d782e *extdata/Bacteria_175seqs.fas
8af3b6590496d20ba42fb0ae79b3bf9e *extdata/Bacteria_175seqs.gen
d920f5c4398f168cbd36c7123b92c313 *extdata/Bacteria_175seqs.sqlite
4df9af224bac358b63aec4eabd55cbe7 *extdata/Chlamydia_trachomatis_NC_000117.fas.gz
34527c88ae8c75d4c207e55fe74a293e *extdata/IDH2.fas
2f696cea3ed97b0efd84e5f4364c2255 *extdata/IhtA.fas
39d310e3d96aa99ad74e2207b6e9f55a *extdata/Influenza.sqlite
6d17771c23f8be09587dc67cb77d4f8b *extdata/PlanctobacteriaNamedGenes.fas.gz
49147204f1cd440626efd91495bbc594 *extdata/Streptomyces_ITS_aligned.fas
b8fe854d77ce158307af3aee9597d056 *help/AA_REDUCED.html
36a4a99ddb7b3f783466cbb4923abcc4 *help/Add2DB.html
6d51a54bc147fca37dcc8a898287819b *help/AdjustAlignment.html
dee15420d9a7dc5ae9860f73f006e8ca *help/AlignDB.html
59d35023e028880c9b585d45a5c2268f *help/AlignProfiles.html
bc27142ce5b324c2eb89b93e2da71303 *help/AlignSeqs.html
efe5c1a0aa6f9d8738f93495df174cc9 *help/AlignSynteny.html
416f573e855008cfc4263225eff33b8c *help/AlignTranslation.html
438b2872746b182a55857716fbfee851 *help/AmplifyDNA.html
ceb370114596e2514cd5bea35c458708 *help/AnIndex
9ea26ec9eb41173246924c97b664c6c4 *help/Array2Matrix.html
fd808a3e4f87775e2cc03d0e73be4583 *help/BrowseDB.html
48d3974805a073dfebf89005788f79e1 *help/BrowseSeqs.html
f5ee3507f09f972c341051f5289271d8 *help/CalculateEfficiencyArray.html
ad4476aca71d867b150b8f26f61db71f *help/CalculateEfficiencyFISH.html
6467f65dec6fb25f63442b306a88953a *help/CalculateEfficiencyPCR.html
1d259edf85d9686a82ec66d0669475e0 *help/Codec.html
a562e876eb63868fc391ed7e0e36fd8a *help/ConsensusSequence.html
f9b5fa6eb49763155a8c9776e1ec318e *help/Cophenetic.html
00898d7468e5f7bf61d59ae266e3daf8 *help/CorrectFrameshifts.html
c77dbf3804a8bc66d13c0db6515c6c6b *help/CreateChimeras.html
f4894d078e3c155356f550b2f235e40a *help/DB2Seqs.html
26e890ecc98ba22b9a7af57205fb7d01 *help/DECIPHER-package.html
26e890ecc98ba22b9a7af57205fb7d01 *help/DECIPHER.html
46071f287f89ba773c805601ac5c7741 *help/DECIPHER.rdb
12bee56e670bfc33f3956ecca7361479 *help/DECIPHER.rdx
a887819883b59f36f5498c368ff78fdc *help/DesignArray.html
24b9f0828801646af74efa93e98255b2 *help/DesignPrimers.html
1a1daec730257c08a31fcfd2d32eb528 *help/DesignProbes.html
da7a237c5d33511cd7c3fffd5231593e *help/DesignSignatures.html
4258ffd5c11c6373f0eb5f713ea7b9bb *help/DetectRepeats.html
5f3f6ff79283f737a98bd3ae7f9238ce *help/DigestDNA.html
dec884d8d5a3d849507387f7929f1ced *help/Disambiguate.html
0568176a9533e8fcfdfa5eab82532451 *help/DistanceMatrix.html
5a25288ded8e6216da8b4d643b586282 *help/ExtractGenes.html
6316b151c0fd37ef91fca9e11cde6807 *help/FindChimeras.html
a63c5da167ea028ae739c582f81c707e *help/FindGenes.html
ecbc4c11f8723e863e8494a5b346bbc1 *help/FindNonCoding.html
4dbbc8371afd83beee66df79dc678d77 *help/FindSynteny.html
e26e2e1208b70ff0c1bdb2bfaf170b54 *help/FormGroups.html
82ec0dd63cf4952969aa33a7d3a01ec7 *help/Genes-class.html
d7db70cbaae15fac1cdd5193a50b9f30 *help/HEC_MI.html
d7db70cbaae15fac1cdd5193a50b9f30 *help/HEC_MI1.html
d7db70cbaae15fac1cdd5193a50b9f30 *help/HEC_MI2.html
b8bfbee9e5316f10ebe98f40b1834081 *help/IdClusters.html
64f3e3a3aee340d10ea86c04dfea9297 *help/IdConsensus.html
36e166e3279f6df0c5b9d0d230c76383 *help/IdLengths.html
ab6735ab4f6b07480ca47729620f004e *help/IdTaxa.html
150205ef177ef15c7aa38ff1f625d156 *help/IdentifyByRank.html
68863c5544bd23979f2f2bc0af3169e5 *help/LearnNonCoding.html
8cdcde68ba8dc9fbc22ca7a00da8627f *help/LearnTaxa.html
0ab6ca3cd3ecd79fcace645cc97fdba1 *help/MIQS.html
3a9998fcac83f8a45f3bcbd83b9df76d *help/MODELS.html
0dd4e778058f252424e5b7586639b0ba *help/MapCharacters.html
580c27eb1362e1e6bdff203893d29507 *help/MaskAlignment.html
80b3a2991d150e47f9e25874684ae496 *help/MeltDNA.html
52e27d3f18c72a3ffaccb9da38b561e2 *help/NNLS.html
c79dc5a03cd4418343df34ad8f6bf3b8 *help/NonCoding-class.html
7b6574f75dcad66fee35cf1fe38886d6 *help/NonCodingRNA.html
7b6574f75dcad66fee35cf1fe38886d6 *help/NonCodingRNA_Archaea.html
7b6574f75dcad66fee35cf1fe38886d6 *help/NonCodingRNA_Bacteria.html
7b6574f75dcad66fee35cf1fe38886d6 *help/NonCodingRNA_Eukarya.html
b1c80a83de92831089dd82b0f4f5c4a8 *help/OrientNucleotides.html
27f89491cf5ea7a28970de3505bd6940 *help/PFASUM.html
5d3a2b0aea71a5b785ad17d676dbe2d6 *help/PredictDBN.html
05a15fbc6c421f8d4838c6fa0eddc16a *help/PredictHEC.html
e122b5a161ee4d5d6c5a0856399675ae *help/RESTRICTION_ENZYMES.html
f0554bb4774536b136c669914abd16ab *help/ReadDendrogram.html
e85d81758ac4c5d1f1944189c440f39a *help/RemoveGaps.html
59c756b3c45ff19068fc4bf163920afa *help/SearchDB.html
b442da354d78b292e84b230ee8a74bfd *help/Seqs2DB.html
f5618fb5664303c58bdc32179c110554 *help/StaggerAlignment.html
07febd570f5057e79daaf524da6b6226 *help/Synteny-class.html
3381ffcf007482f173f695265b25910a *help/Taxa-class.html
1674db8feb0b53f5478d486835d61fbb *help/TerminalChar.html
beefa1f3c682c839570b81c5d90e95a5 *help/TileSeqs.html
5a0fec040c2fc4db22f0c21bb0ee2da2 *help/TrainingSet_16S.html
5bff3dec032d6be9393307a8a595eaa7 *help/TrimDNA.html
3f2b3be18d9acde664cd8743520a6e8b *help/WriteDendrogram.html
213a1505f2c54079dfaf0b6a4b2d30c9 *help/WriteGenes.html
82ec0dd63cf4952969aa33a7d3a01ec7 *help/[.Genes.html
07febd570f5057e79daaf524da6b6226 *help/[.Synteny.html
3381ffcf007482f173f695265b25910a *help/[.Taxa.html
55f837e0e03202daa39aef758f5d5413 *help/aliases.rds
3381ffcf007482f173f695265b25910a *help/c.Taxa.html
fe23d1c9d09ccf0dd76027a4c1e69a1a *help/deltaGrules.html
84e9b093b22c86c594cd7c6730a80b68 *help/deltaHrules.html
e86a882d386bbc3c40ac20f5dd8f2d65 *help/deltaHrulesRNA.html
b8e18cea227f65425d935d7032d157ee *help/deltaSrules.html
39898cbc94219bfb1f94e72147c5bc47 *help/deltaSrulesRNA.html
07febd570f5057e79daaf524da6b6226 *help/pairs.Synteny.html
1c5739e9d3865beae23d56983dba1e0a *help/paths.rds
82ec0dd63cf4952969aa33a7d3a01ec7 *help/plot.Genes.html
07febd570f5057e79daaf524da6b6226 *help/plot.Synteny.html
3381ffcf007482f173f695265b25910a *help/plot.Taxa.html
82ec0dd63cf4952969aa33a7d3a01ec7 *help/print.Genes.html
c79dc5a03cd4418343df34ad8f6bf3b8 *help/print.NonCoding.html
07febd570f5057e79daaf524da6b6226 *help/print.Synteny.html
3381ffcf007482f173f695265b25910a *help/print.Taxa.html
2c834b572b014020bf1dddb6a7cb97d2 *html/00Index.html
945a5037a48a674ca2c9b99b84e54a10 *html/AA_REDUCED.html
a7a457614d3d92afecb659985b77aafa *html/Add2DB.html
7bba4b6c13695e868f87b561deb68075 *html/AdjustAlignment.html
1940d4d8591681cfa96d85c9b555f439 *html/AlignDB.html
e5df379c5aaa56b14ddf4d489b9a2245 *html/AlignProfiles.html
e469ced8a6e1e2a92e4344f3c6cb9003 *html/AlignSeqs.html
be96f917705bfd1243c2105d31282639 *html/AlignSynteny.html
3e6dbbc4013c648a308dfc0a2f41d4be *html/AlignTranslation.html
964a1922731066f6c8ddb848e5f555da *html/AmplifyDNA.html
b07bff79406db802e55653f9915c7772 *html/Array2Matrix.html
412714506b6df5e5e8e3265d6ba09a0d *html/BrowseDB.html
b8891460274e79f16a5ff6214aa8d3ca *html/BrowseSeqs.html
9b371e7cdfc7415b38dc1a190935537f *html/CalculateEfficiencyArray.html
89108e1b314e044d76ab1a6d81f21f8d *html/CalculateEfficiencyFISH.html
b930c0eca614ca605a3b7e77387e1c70 *html/CalculateEfficiencyPCR.html
497c15464332fc0dda11ecb488b34e88 *html/Codec.html
d62b87c705f7b021749ac984e14574e8 *html/ConsensusSequence.html
bf869978126c6ff5086b47c9a74ec05d *html/Cophenetic.html
cee305989d324d48e2df82d8ac411652 *html/CorrectFrameshifts.html
1f45f0b69c5a867c70a99b6623065026 *html/CreateChimeras.html
7628123fbe97b03ab3295e48703101ec *html/DB2Seqs.html
58ee1325040e3adb4a7e77b18b29f5f4 *html/DECIPHER-package.html
0c8c5387bcc1070715ea2fb0de5da796 *html/DesignArray.html
01d21794a408527e03c745ac3fe558a6 *html/DesignPrimers.html
538612ad5b97cb0a23f2158f94f919e7 *html/DesignProbes.html
1203927a046b3f4ee8ba982f8f09f598 *html/DesignSignatures.html
4f3d8ffb04dfb1abe827eec6f9951d86 *html/DetectRepeats.html
800aee2f699fe2ec63794c7874a607c0 *html/DigestDNA.html
9a8fd7b05173791f4b37d1e60dd9dd85 *html/Disambiguate.html
b9c740ebf5a1eafde1b327a2519c7fb6 *html/DistanceMatrix.html
b72e625f7c413d646d3736eab67d6307 *html/ExtractGenes.html
a21f7fa0824a89acb7740be76f7208ef *html/FindChimeras.html
9b1ef618ef760d66ad3869f5a1bf92df *html/FindGenes.html
9d959505e60205a6914e5ae4aa38d081 *html/FindNonCoding.html
885e01cacf779ff4c924d71bc31da36b *html/FindSynteny.html
e8db04a79dfa151fe058d7416c0e7441 *html/FormGroups.html
f268607361dade3308f7a83885edbe1e *html/Genes-class.html
a100f5c4fa4d459517b2896149aafb1a *html/HEC_MI.html
4249355e07c3005aab3e46d23dbc3422 *html/IdClusters.html
2b7fcbea67618c01d9565a4d1075682e *html/IdConsensus.html
9207198a394ced3ecc0a9b740ef5673b *html/IdLengths.html
f4e2995fe27ca3d4312978343bc68bc3 *html/IdTaxa.html
2ebcb824571060497711645b03565c22 *html/IdentifyByRank.html
4505852085813093ff38356913fddffc *html/LearnNonCoding.html
e8fe0b6d9f415b50fad224c15c739f87 *html/LearnTaxa.html
49f1d2ef6904f6433bb108bc854d4e4b *html/MIQS.html
9e1b4b3c00feac93460afb1d02bc33ac *html/MODELS.html
1eef7f75ea44fdc4485fbd3cb6c3f20f *html/MapCharacters.html
f88e70d2deb4e510ccbede991e30654e *html/MaskAlignment.html
d54e8a445f48b49e6dac3f1fc8383e8f *html/MeltDNA.html
87963e862ae46ef375f52628cb6dc7b7 *html/NNLS.html
62b63f1b16f2f798a59c3beb5c3f82c1 *html/NonCoding-class.html
b749893275be80b805fa21e724012abb *html/NonCodingRNA.html
e21c31983e2b21ede70751779875ad48 *html/OrientNucleotides.html
cdedac899956b95a6329d741c6fb5d0b *html/PFASUM.html
52f69f2769bbdd4eb8df48cd93631da2 *html/PredictDBN.html
5b8216c6243e07e7dc4570639e74e9b3 *html/PredictHEC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1905787921d38d8b845eadb45ce885f8 *html/RESTRICTION_ENZYMES.html
5f140b6b3e7eb8c0478e44d790552231 *html/ReadDendrogram.html
ff65a5dc9e9e556b5dd9a8fbe3b84c5e *html/RemoveGaps.html
e95f8faf8d591b97452b55090498ddf0 *html/SearchDB.html
1bbe63553e5f61acc4095ec77eeaf177 *html/Seqs2DB.html
4ad5d49031abcf5e12c6dffbb4a51c07 *html/StaggerAlignment.html
55f033bfbdc461340554b15cb164aa50 *html/Synteny-class.html
299b0b515ae11c6c5e71538a2496e7bd *html/Taxa-class.html
09c6f030772df384d9a924edeb40ab52 *html/TerminalChar.html
5fb7f9c237db907ac97226776d30c496 *html/TileSeqs.html
6dc9c2f26b0f0809cc4f601450aa486d *html/TrainingSet_16S.html
2543c26ac8a0ecc05f74dc5ba73a37fe *html/TrimDNA.html
1e7884d681b0bfe3a75f33720aa73b00 *html/WriteDendrogram.html
fd12433b6782a693b68c60971c4a9060 *html/WriteGenes.html
cd9070dde2689aa05ef67a041a8b07d6 *html/deltaGrules.html
31fa14da06d730b0c5a3542e56646066 *html/deltaHrules.html
bbbcc3d3ee7ad6d2a17f99392cbff4fb *html/deltaHrulesRNA.html
8896ff4fb4d2e73ab1a296e05bba495b *html/deltaSrules.html
ca7a667d825f59b9c37454d8c37a88cb *html/deltaSrulesRNA.html
c1583d3dee3719b9406ff0e136a022a5 *libs/i386/DECIPHER.dll
8739a634b4be3ada5897fcd7bbd9d625 *libs/x64/DECIPHER.dll
