R: Visualization heatmap of cluster data of CYT

plotClusterHeatmap {CytoTree}

R Documentation

Visualization heatmap of cluster data of CYT

Description

Visualization heatmap of cluster data of CYT

Usage

plotClusterHeatmap(
  object,
  color = colorRampPalette(c("blue", "white", "red"))(100),
  scale = "row",
  ...
)

Arguments

`object`	An CYT object
`color`	vector. Colors used in heatmap.
`scale`	character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
`...`	options to pass on to the `pheatmap` function.

Value

ggplot2 figure

Examples


cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

plotClusterHeatmap(cyt)
plotClusterHeatmap(cyt, color = colorRampPalette(c("purple","white","yellow"))(100))
plotClusterHeatmap(cyt, cluster_row = FALSE)
plotClusterHeatmap(cyt, cluster_row = FALSE, cluster_col = FALSE)

[Package CytoTree version 1.2.0 Index]