3d9efa065ea789ca8992e237e9ae710c *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
d596d6a5637291a8b22eb7601567912a *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
9caf8945894ebd1131488755931c5d11 *Meta/hsearch.rds
7ca01fe0ecd5a654a307b3905ac6e7db *Meta/links.rds
08110b03a1bc2ab463c1c9f6e24d7a98 *Meta/nsInfo.rds
e57946468f8fa9d7c1a8a9be587485d9 *Meta/package.rds
1044e284029a0127340886f44d951f68 *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CopyNumberPlots
626514beb34d7d5be4b69fd75dc42903 *R/CopyNumberPlots.rdb
9b566bc4c567585f82e4bd433f23cf1c *R/CopyNumberPlots.rdx
a319d31378583f387ade3cacf9283e46 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
e4e14773f97c72bea0e4387acd165639 *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
1b50c46c13b42191864f281d0cfdd08f *help/CopyNumberPlots.rdb
bf781aa4a117fd49402fb75b2871d2ea *help/CopyNumberPlots.rdx
1c15ebb92f333ec833446615fd9376e7 *help/EnsemblStyle.html
57804547bf7aa7f502856806685e9e03 *help/UCSCStyle.html
64ec7cb839f61b360c31156c12807e9a *help/Ztree2Hclust.html
1630873675deeec93b32237d738b372a *help/aliases.rds
8901cddc2efb0fe73e650a28f85a5d0b *help/colByCopyNumber.html
afb8ecc85c33286ad9ce64b4f9c0eee0 *help/computeHclustPlotOrder.html
c2aacb7d7be434da1fec4f924c26d0a4 *help/getBAFColumn.html
0e7738115befb323519e6a62f91662b1 *help/getChrColumn.html
63e0a8b1941094b7334a9b5ec49cbb30 *help/getColumn.html
ca96f200ba53a3b6e0e3e75bdf6ba023 *help/getCopyNumberColors.html
8d96413823e8ee75ecc57de317a1d678 *help/getCopyNumberColumn.html
ece0e1e68d7cd7558dcdd90b4df7e71a *help/getEndColumn.html
469917756848259a7cd08889945699d8 *help/getIDColumn.html
9826442ced703df9f68ecbfc636e14e3 *help/getLOHColumn.html
87ddf889af477e029a4011f56cd6866b *help/getLRRColumn.html
6dad2b4adad73f5e7de964eb945682e9 *help/getPosColumn.html
46d7a80144d05195ad164d0d98233778 *help/getSegmentValueColumn.html
38dfdd02aa631c5ef6be61ecfdce78c5 *help/getStartColumn.html
b0a4c8ae513596d8a1a8d171039aded7 *help/loadCopyNumberCalls.html
ff02f0d2301e1c93673a3fc6f6cee8b8 *help/loadCopyNumberCallsCNVkit.html
deff006ca09652affbffa985ef3d1356 *help/loadCopyNumberCallsCnmops.html
fb0d27d25bc5685cd97d7c1632b6dd1e *help/loadCopyNumberCallsDECoN.html
bec7d0727cf5f1d5d73eb7ec08d647a1 *help/loadCopyNumberCallsDNAcopy.html
b79ef8b0f0f7764b9a4bc94518f6d8e6 *help/loadCopyNumberCallsPanelcnmops.html
0fb9472f6af62fddaa578f988d9f7df5 *help/loadCopyNumberCallsSeg.html
a465e15a55d89be5a77f8a70411e1b03 *help/loadCopyNumberCallspennCNV.html
0e7db2994897f690f53ce3de6e6cce58 *help/loadSNPData.html
627b7a191fb06897f55aac15efb0090a *help/loadSNPDataDNAcopy.html
d20e03b5e6884d885fabcc7f2bd17bd7 *help/loadSNPDataFromVCF.html
99e94a69e0f06fa795454f62f327ada8 *help/paths.rds
a2750d443b342c88bd2f92530283580f *help/plotBAF.html
9a3a0f6ceea5c6d6e1831434782310bc *help/plotCopyNumberCalls.html
0843e4e04ba555c9f757157e1086d247 *help/plotCopyNumberCallsAsLines.html
8ff489c148720fc63ebb936109734651 *help/plotCopyNumberSummary.html
b62ab8a1510f491a6a4fc39b08352033 *help/plotLRR.html
c06c96fcfcb64b11350ebbd924a93ecd *help/plotSingleCellCopyNumberCalls.html
071963b9a00efe81d63877e2cfff58dd *help/plotSingleCellCopyNumberSummary.html
43382e0b119e9dd5a49fff10024aba5b *help/prepareLabels.html
455889ff6de1e44eefc50ea2fe878e84 *help/readHDF5Ztree.html
7cfcf0695e62bfe40bea994f5c5c2d08 *help/removeNAs.html
ed51d251e67fcdc7bf48a17e86ef6a2a *help/transformChr.html
9411b1b5da9b8357e75f8bb42792e748 *html/00Index.html
3f421c62002f96e8ccc972a7f55531f7 *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
125402489d8e7815525368efdfff637e *html/UCSCStyle.html
4c4a080a0628c50aeb2996bd7d2d954a *html/Ztree2Hclust.html
cedf5c5fdc9840b1986b5524aa02dacd *html/colByCopyNumber.html
38a29e5a4e4f33bb71631030ed51e679 *html/computeHclustPlotOrder.html
e8ed2f676e636de3b11e37b4f3cc0ff2 *html/getBAFColumn.html
e82ec47fcfe9012a80ad40c7de4e2695 *html/getChrColumn.html
a93d2a39329821022dfb038eedca6b19 *html/getColumn.html
c345e563c70273f7262963a2794169a8 *html/getCopyNumberColors.html
340b37937ae8b47b10d2d081b5bcb37b *html/getCopyNumberColumn.html
a19e4ae31543e655ca97fbc63056a548 *html/getEndColumn.html
8e8454688747e6e90e938a4f566b5c1a *html/getIDColumn.html
979915ca75d7d6c8824c87cee0402f26 *html/getLOHColumn.html
bacc5d1ea8dc2f57c7f7be820f899311 *html/getLRRColumn.html
dc0f10ba516d28fa4706e269dda773cf *html/getPosColumn.html
a4233230db9a1668a7f6ea5fd6bd5c5c *html/getSegmentValueColumn.html
e06fe48594aa9dc5b8e30daae8f8277b *html/getStartColumn.html
b6b27f7baeaebabddb328f8b2bfc80d1 *html/loadCopyNumberCalls.html
d48f99e6916c2e478ab6e8e60c1f8aba *html/loadCopyNumberCallsCNVkit.html
c71ac529e6a065b1b7698ece25062a74 *html/loadCopyNumberCallsCnmops.html
09641b2d2be3ba8aca661ade1c62f1a2 *html/loadCopyNumberCallsDECoN.html
e436534d90c949ce6a3afc7a3206fafa *html/loadCopyNumberCallsDNAcopy.html
e4004162df84f7ab5608cfe120028e68 *html/loadCopyNumberCallsPanelcnmops.html
2394192a4f6144330122533e6b8cdaa9 *html/loadCopyNumberCallsSeg.html
08f8bf47e4c807b8a4d067a58340f068 *html/loadCopyNumberCallspennCNV.html
70d93f6e2d6dcae21a8980c8c906fc83 *html/loadSNPData.html
eec7e91e54bcbf866e2c3493ecb3428d *html/loadSNPDataDNAcopy.html
7aaf0059e176d6d08589f23099f18099 *html/loadSNPDataFromVCF.html
d9da3acd0999899c4bb9936c620c3755 *html/plotBAF.html
141da35968ef0aae5affa5c54d88f3bc *html/plotCopyNumberCalls.html
9f6845db27eb212f16e8c4d56e529421 *html/plotCopyNumberCallsAsLines.html
d6b9afdacf22d20104cf01c1b2540a3d *html/plotCopyNumberSummary.html
76043c1c9b0621f58dbf8f1fdbecaa4e *html/plotLRR.html
1cd7a8dcb6abc51c3b1b456b79138c41 *html/plotSingleCellCopyNumberCalls.html
54cf6605a5e7830cdbb49e89b8ee4051 *html/plotSingleCellCopyNumberSummary.html
2d75ae7b6b54c16bb746407966dfbce6 *html/prepareLabels.html
42707d638ae795d965d4f48d48d4a7da *html/readHDF5Ztree.html
d7659237ef280a5686a1144a791b400e *html/removeNAs.html
3752e0e18c97f921efe4025d1cb5170a *html/transformChr.html
