538c34ea985c2656f626e2bfdd0fffff *DESCRIPTION
c6dcd6052f07d5044a778fdf18f98fe3 *INDEX
6a65ceb9da24a480db51f0199155b3a3 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
b4a951ebd73e7ec16d82ef55d3eac02a *Meta/hsearch.rds
94918d1cc3d870687fcf3590baf97289 *Meta/links.rds
5a6bf66bb41cd21832a555f76f891083 *Meta/nsInfo.rds
34db5892b1b1163af05d119037431349 *Meta/package.rds
b8b35a4a12a41208ea84b9a632562957 *Meta/vignette.rds
ef03bbed8aeb3fc056d8b98bead255b7 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/BadRegionFinder
3c1b9eba4c2f51b1b953f90bfbf84c9e *R/BadRegionFinder.rdb
504c826256074ae9e16fa8ae57678220 *R/BadRegionFinder.rdx
6514da9bf9246ba7ce9d717714248320 *doc/BadRegionFinder.R
1e06b02952fdc753cf8770c4b8fee6c2 *doc/BadRegionFinder.Rnw
607afcb7d6a69ab24412335d0bd12a0a *doc/BadRegionFinder.pdf
1b0c3b952c482c09e04953f0d7c50edd *doc/index.html
57260012704b57257d5e6554a899b473 *extdata/SampleNames.txt
b6dd0d7deabffe903a0cc6d48f8f0128 *extdata/SampleNames2.txt
311ac38889571141dcfc76b7549f686a *extdata/Test2_454.bai
55e48d8f4ad9831a652beffd8852019c *extdata/Test2_454.bam
b11b1fb6c73b5fd36f06601ba89ed130 *extdata/Test2_ion.bai
dfaeb4e7b5bfefd8d92420e9d8f87bd5 *extdata/Test2_ion.bam
1fd740102290e22f9375f392ddc9df28 *extdata/Test_454.bai
72dc73efbaaa4a432bcab90d4e2505a5 *extdata/Test_454.bam
5c3e3802075486ba31f35095078129e4 *extdata/Test_ion.bai
fb7395262ecc389ae2d8747074d1f269 *extdata/Test_ion.bam
72edc63cbd18548ad0441b76804b0bc2 *extdata/regionsOfInterest.bed
3b58e22463ee181a5165b065ff312540 *extdata/targetRegions.bed
482b755ffc5ba91f265360309aab880a *extdata/targetRegions2.bed
bb19315e2a63a27c8de2574fbe790375 *help/AnIndex
4ce50a05075e755341fdeb509ead79b8 *help/Bad Coverage.html
4ce50a05075e755341fdeb509ead79b8 *help/BadRegionFinder-package.html
4ce50a05075e755341fdeb509ead79b8 *help/BadRegionFinder.html
d299368ab05af218b4d79a8220fb7e94 *help/BadRegionFinder.rdb
a820dbe39f56183b5b36c51b30140b80 *help/BadRegionFinder.rdx
4ce50a05075e755341fdeb509ead79b8 *help/Coverage Classifier.html
8e8106159c43ae67b1c49b503d02ce53 *help/aliases.rds
2229bf32059ade3ffce8cdac844e1ab7 *help/determine Coverage Quality.html
670950046107ba2cdb71897e82f49c33 *help/determine Quantiles.html
4f6d97934a0aec48ab14eb5e7a432f5f *help/determine Regions Of Interest.html
5cf86d69ab7f2a2c8b239ce8d710028b *help/determineCoverage.html
2229bf32059ade3ffce8cdac844e1ab7 *help/determineCoverageQuality.html
670950046107ba2cdb71897e82f49c33 *help/determineQuantiles.html
4f6d97934a0aec48ab14eb5e7a432f5f *help/determineRegionsOfInterest.html
bda52c97e1f8805cc8505897210e79c7 *help/paths.rds
0f4de3dbeea1d5926d1bbd90f459dcd1 *help/plot Detailed.html
f1c92fa05c0db5054d81f54a844a7986 *help/plot Summary Genes.html
edc79b6a9ccce7974177b87609092d1f *help/plot Summary.html
0f4de3dbeea1d5926d1bbd90f459dcd1 *help/plotDetailed.html
edc79b6a9ccce7974177b87609092d1f *help/plotSummary.html
f1c92fa05c0db5054d81f54a844a7986 *help/plotSummaryGenes.html
e4bcec6c05a866691109aeb0f0dea0e2 *help/report Bad Regions Detailed.html
a3f8c75387485a1e1927a7d8457ce300 *help/report Bad Regions Genes.html
7780fd649c0ac7a1139549b253b60ad0 *help/report Bad Regions Summary.html
e4bcec6c05a866691109aeb0f0dea0e2 *help/reportBadRegionsDetailed.html
a3f8c75387485a1e1927a7d8457ce300 *help/reportBadRegionsGenes.html
7780fd649c0ac7a1139549b253b60ad0 *help/reportBadRegionsSummary.html
32ce9a245e4b39ad12c25b82af5a06ea *html/00Index.html
25094b0ee7fce20e40e2ab97aaa9f328 *html/BadRegionFinder-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
76de52394d7b8f261d70b010a640d23a *html/determineCoverage.html
54d58725aaaeb6ee7b199ff80ff9f2d1 *html/determineCoverageQuality.html
202dbc20e5c8e109f03804902e45912a *html/determineQuantiles.html
416f09c330937c13add0f0ca788a1f40 *html/determineRegionsOfInterest.html
6fa437130ba6635eb64d1546211126a9 *html/plotDetailed.html
06aed46b3fe4e5826ba2c01c1a5d89ea *html/plotSummary.html
8635fec47f85d15cfb41737b1b673f12 *html/plotSummaryGenes.html
c6bf32d5a0006529d3b05114fb64d2b8 *html/reportBadRegionsDetailed.html
7bc0b04126225e2e1d1577601cb38267 *html/reportBadRegionsGenes.html
cbd757581b82e39e1936f0900e1ec9fc *html/reportBadRegionsSummary.html
