a3081e06503f21e358370509ac5ce4a1 *DESCRIPTION
4d34e9192892ea2c33815f7fbd1b6de9 *INDEX
6fee5407006cdbf611eab3e3df7acb97 *LICENSE
5c6ff636fb11f8ccfe60390fa06027f0 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
41427929df17ae97525266fa1d358bac *Meta/hsearch.rds
55be7c91129f790fce92cc3bb0ba83d5 *Meta/links.rds
9448f03151d1a7258de43d52e35bc1bf *Meta/nsInfo.rds
37b990845584f5540dd4e5d00128a927 *Meta/package.rds
9c708c4e32a519ac4f7ef6345a0af7e5 *Meta/vignette.rds
ccb34bc49be65dade7bf567ea32337c8 *NAMESPACE
96bef70c515134fa6b6b61bc3261aec2 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/ALPS
8b919596abd02a0bdcb067ef3209e1dd *R/ALPS.rdb
6a2a982c482fda725ccc1f0d0fca0fd8 *R/ALPS.rdx
5ab31d887f8e1b94e08e6e460d6b29c6 *doc/ALPS-vignette.R
7ea2d740bb8358702b8099c00bcfb3d8 *doc/ALPS-vignette.Rmd
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ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_1.bed
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_2.bed
9314e8ce47fa6a45160df71422933311 *extdata/bw/ALPS_example_datatable.txt
ff1f3375ca7547ee83d5fd8e0b8f4c71 *extdata/bw/BRCA_000CFD9F_T2.bw
3328ce768cc212f5226d12f4dc864c93 *extdata/bw/BRCA_01112370_T1.bw
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f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_2.bed
490f0c5d7f94dbd85ce4c37b8493b20a *extdata/bw/GBMx_09C0DCE7_T1.bw
cd15e4c493b7e66612136be4eca3923f *extdata/bw/GBMx_09C0DCE7_T2.bw
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_1.bed
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_2.bed
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_1.bed
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cdf81dbc86f32abf4129f43cad4da50f *extdata/bw/LGGx_116B070A_T2.bw
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_2.bed
45bb10fb079caf5ba45b49183c0d77db *extdata/motifs/MA0147.2.jaspar
6591fa16fafac302ddb524e8e4096b66 *extdata/motifs/MA0147.2.meme
969f0989ce659d7a7474a73af0d97179 *extdata/motifs/MA0147.2.pfm
0c72893942d6efe6bab75e260413ce13 *extdata/motifs/MA0147.2.transfac
d68cf9b910d4a12a0729d8a0bae64b43 *extdata/motifs/cmyc.homer
7a1917605c787487c108177c94f8506b *extdata/overlap_violins/data_table_4_overlapviolins.txt
98aea2aba1fb3cc07fb309e5601e268d *extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
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c0736e971a208afb1a1c93eee51a9f81 *help/ALPS.html
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2651aa7ae083ee6d6e5120f0d81f67d8 *help/multiBigwig_summary.html
7129ca4ef9c7cf3301ca622aa3014400 *help/paths.rds
3103e0d76b0f117568bc894a412c48dd *help/pipe.html
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0fe9cd2f023384c9a206c4307d11c73e *help/plot_correlation.html
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122d0020f08d9f06731a8e0d1882df0a *help/process_homer.html
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e7678da977084f2da52ca7e23a410818 *help/process_meme.html
d4c565d7822d2810050a3d36d25ff45b *help/process_pfm.html
167e3ff42152c0a88d78d35b9a52e388 *help/process_transfac.html
e43bc8428c2414fff613afe0871ea426 *html/00Index.html
e58fd907af0cedd905dc1bfaa25e1cc4 *html/ALPS-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
056047b934eff7d9810420ba7ffb5c48 *html/get_genomic_annotations.html
afb1f205b53d999375f952791cbb1192 *html/get_variable_regions.html
d819c6027deff9aaba17c0377f9bebcc *html/merge_GR.html
19c83a3603095609ebcf13e7226298e4 *html/multiBigwig_summary.html
fb550a3d9e83bd710d649938ba39e58d *html/pipe.html
c06e24d42252be16b4be6a056ed80f46 *html/plot_browser_tracks.html
89a7093f523b06b5826d13785e2f921e *html/plot_correlation.html
1f08915189536371a395f55afca62a53 *html/plot_enrichments.html
acc62b1710fc4e976ff70bd322529357 *html/plot_genomic_annotations.html
95ea351cff9a020a5bce7a87792cee44 *html/plot_motif_logo.html
fa5d3ff03f435995005e55b80af060ad *html/process_homer.html
8276029204921f9608a0375f9fb67214 *html/process_jaspar.html
70a40dc7b9818f1f704efabd2a4a584d *html/process_meme.html
558d7b68d6dd15014efe7406088b282b *html/process_pfm.html
e02b1dec500274467f7b7538e905b9c4 *html/process_transfac.html
17c22bfaec515572ffe80e4a74e0a479 *script/DATASET.R
