%% bigPint package references

@article{robinson2010edger,
  title={edgeR: a Bioconductor package for differential expression analysis of digital gene expression data},
  author={Mark D. Robinson and Davis J. McCarthy and Gordon K. Smyth},
  journal={Bioinformatics},
  volume={26},
  number={1},
  pages={139--140},
  year={2010},
  publisher={Oxford University Press}
}

@article{love2014moderated,
  title={Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2},
  author={Michael I. Love and Wolfgang Huber and Simon Anders},
  journal={Genome biology},
  volume={15},
  number={12},
  pages={550},
  year={2014},
  publisher={BioMed Central}
}

@article{ritchie2015limma,
  title={limma powers differential expression analyses for RNA-sequencing and microarray studies},
  author={Matthew E. Ritchie and Belinda Phipson and Di Wu and Yifang Hu and Charity W. Law and Wei Shi and Gordon K. Smyth},
  journal={Nucleic acids research},
  volume={43},
  number={7},
  pages={e47--e47},
  year={2015},
  publisher={Oxford University Press}
}

@article{brown2015developmental,
  title={Developmental profiling of gene expression in soybean trifoliate leaves and cotyledons},
  author={Anne V. Brown and Karen A. Hudson},
  journal={BMC plant biology},
  volume={15},
  number={1},
  pages={169},
  year={2015},
  publisher={BioMed Central}
}

@misc{soybeanIR,
  title={NCBI SRA bioproject accession: PRJNA318409},
  author = {AN Moran Lauter and MA Graham},
  year={2016}
}

@article{Chandrasekhar,
  title={Effective clustering algorithms for gene expression data},
  author={T Chandrasekhar and K Thangavel and E Elayaraja},
  journal={International journal of computer applications},
  volume={1201},
  pages={4914},
  year={2012},
}

@article{litre,
  title={Exploring gene expression data, using plots},
  author={D Cook and H Hofmann and EK Lee and H Yang and B Nikolau and E Wurtele},
  journal={Journal of Data Science},
  volume={5},
  pages={151–182},
  year={2007},
}

@article{yeast,
  title={GC-Content normalization for RNA-Seq data},
  author={D Risso and K Schwartz and G Sherlock and S Dudoit},
  journal={BMC Bioinformatics},
  volume={12},
  pages={480},
  year={2011},
}

@article{Marioni,
  title={RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays},
  author={JC Marioni and CE Mason and SM Mane and M Stephens and Y Gilad},
  journal={Genome Research},
  volume={18},
  pages={1509–1517},
  year={2008},
}

@article{Robinson,
  title={A scaling normalization method for differential expression analysis of RNA-seq data},
  author={MD Robinson, and A Oshlack},
  journal={Genome Biology},
  volume={11},
  pages={R25},
  year={2010},
}

